Evidence map›Paper›PMID 34427872›Full record

ArticleGenes & genomics2021

Proteome profile of spleen in rock bream (Oplegnathus fasciatus) naturally infected with rock bream iridovirus (RBIV).

Eun-Ji Ko, Hyunsu Kim, A-Reum Lee, Kyung-Yoon Jeon, Ahran Kim, Do-Hyung Kim, Chan-Il Park, Yung Hyun Choi, Suhkmann Kim, Heui-Soo Kim and 2 more

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Article in Genes & genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.1field-weighted citation impact, top 54% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

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5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Eun-Ji KoDepartment of Parasitology and Genetics, Kosin University College of Medicine, Busan, Republic of Korea.
Hyunsu KimDepartment of Parasitology and Genetics, Kosin University College of Medicine, Busan, Republic of Korea.
A-Reum LeeDepartment of Parasitology and Genetics, Kosin University College of Medicine, Busan, Republic of Korea.
Kyung-Yoon JeonDepartment of Parasitology and Genetics, Kosin University College of Medicine, Busan, Republic of Korea.
Ahran KimPathology Research Division, National Institute of Fisheries Science, Busan, Republic of Korea.
Do-Hyung KimDepartment of Aquatic Life Medicine, College of Fisheries Science, Pukyong National University, Busan, Republic of Korea.
Chan-Il ParkDepartment of Marine Biology and Aquaculture, College of Marine Science, Gyeongsang National University, Tongyeong, Republic of Korea.
Yung Hyun ChoiDepartment of Biochemistry, College of Oriental Medicine, Dongeui University, Busan, Republic of Korea.
Suhkmann KimDepartment of Chemistry, College of Natural Sciences, Pusan National University, Busan, Republic of Korea.
Heui-Soo KimDepartment of Biological Sciences, College of Natural Sciences, Pusan National University, Busan, Republic of Korea.
Mee Sun OckDepartment of Parasitology and Genetics, Kosin University College of Medicine, Busan, Republic of Korea.
Hee-Jae ChaDepartment of Parasitology and Genetics, Kosin University College of Medicine, Busan, Republic of Korea. hcha@kosin.ac.kr.ORCID 0000-0002-6963-2685
Kosin University · KRPusan National University · KRDong-Eui University · KRGyeongsang National University · KRNational Institute of Fisheries Science · KRPukyong National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRock bream iridovirus (RBIV) is one of the most dangerous pathogens that causes the highest mortality in the aquaculture of rock bream (Oplegnathus fasciatus). Even though RBIV infection leads to huge economic loss, proteome studies on RBIV-infected rock bream have not been conducted to provide information about the differential protein expression pattern by the host protection system.

objectiveThe purpose of this study was to investigate the protein expression patterns in spleens of rock bream olive after infection by RBIV or mixed infection by RBIV and bacteria.

methodsDepending on the infection intensity and sampling time point, fish were divided into five groups: uninfected healthy fish at week 0 as the control (0C), heavily infected fish at week 0 (0H), heavily mixed RBIV and bacterial infected fish at week 0 (0MH), uninfected healthy fish at week 3 (3C), and lightly infected fish at week 3 (3L). Proteins were extracted from the spleens of infected rock bream. We used 2-DE analysis with LC-MS/MS to investigate proteome changes in infected rock bream.

resultsThe results of the LC-MS/MS analyses showed different protein expression profiles after infection. Proteins related to oxygen transport and energy generation, such as hemoglobin, beta-globin, and ATP synthase, were mostly expressed in the infected spleen. Whereas proteins involved in structure and cell movement, such as tubulin, myosin, actin binding proteins, and intermediate filament proteins, were down-regulated in the infected spleens. The protein expression profiles between infection by RBIV and mixed infection by RBIV and bacteria showed similar patterns.

conclusionsOur results indicated that infection by RBIV or mixed infection by RBIV and bacteria triggered energy generation and oxygen-transport, but cell migration and constructional changes in the spleen were extremely decreased.

Indexed as

FishesIridovirusProteomeAnimalsChromatography, LiquidFish DiseasesPerciformesProteomicsSpleenTandem Mass SpectrometryProteomeBacteria mixed infectionOplegnathus fasciatusProteomicsRock breamRock bream iridovirusStreptococcus parauberis

Identifiers

PMID34427872
OpenAlexW3195848229

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.