Evidence map›Paper›PMID 34426525›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

DNA-encoded chemistry technology yields expedient access to SARS-CoV-2 M

Srinivas Chamakuri, Shuo Lu, Melek Nihan Ucisik, Kurt M Bohren, Ying-Chu Chen, Huang-Chi Du, John C Faver, Ravikumar Jimmidi, Feng Li, Jian-Yuan Li and 13 more

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 61 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Review
  6. A Novel Fluorescence Polarization Binding Assay for the Main Protease (MACS pharmacology & translational science · 2025
    Article
  7. Article
  8. Review
  9. Article
  10. Discovery of highly potent and ALK2/ALK1 selective kinase inhibitors using DNA-encoded chemistry technology.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  11. Article
  12. FSOACS medicinal chemistry letters · 2024
    Article
  13. Mask and Release Strategy-Enabled Diversity-Oriented Synthesis for DNA-Encoded Library.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  14. Review
  15. Acta pharmaceutica Sinica. B · 2024
    Review
  16. Review
  17. Small-molecule discovery through DNA-encoded libraries.Nature reviews. Drug discovery · 2023
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 2 institutions in 1 country.

Srinivas ChamakuriCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
Shuo LuDepartment of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX 77030.
Melek Nihan UcisikCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
Kurt M BohrenCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0002-3183-4118
Ying-Chu ChenCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
Huang-Chi DuCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
John C FaverCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0002-0181-9283
Ravikumar JimmidiCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
Feng LiCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0002-9680-4614
Jian-Yuan LiCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
Pranavanand NyshadhamCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
Stephen S PalmerCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
Jeroen PolletDepartment of Pediatrics, National School of Tropical Medicine, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0003-1420-4015
Xuan QinCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
Shannon E RoncaDepartment of Pediatrics, National School of Tropical Medicine, Baylor College of Medicine, Houston, TX 77030.
Banumathi SankaranDepartment of Molecular Biophysics and Integrated Bioimaging, Berkeley Center for Structural Biology, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.
Kiran L SharmaCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0002-1988-389X
Zhi TanCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.
Leroy VersteegDepartment of Pediatrics, National School of Tropical Medicine, Baylor College of Medicine, Houston, TX 77030.
Zhifeng YuCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030.ORCID 0000-0001-7278-8253
Martin M MatzukCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030; mmatzuk@bcm.edu timothyp@bcm.edu damian.young@bcm.edu.ORCID 0000-0002-1445-8632
Timothy PalzkillDepartment of Pharmacology and Chemical Biology, Baylor College of Medicine, Houston, TX 77030; mmatzuk@bcm.edu timothyp@bcm.edu damian.young@bcm.edu.
Damian W YoungCenter for Drug Discovery, Department of Pathology & Immunology, Baylor College of Medicine, Houston, TX 77030; mmatzuk@bcm.edu timothyp@bcm.edu damian.young@bcm.edu.
Baylor College of Medicine · USLawrence Berkeley National Laboratory · US

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI James M Holton · 2017 to 2026
$28.6M
FOXA1 inhibitors to overcome endocrine resistance in ER+ breast cancerP20CA221729 · NCI · BAYLOR COLLEGE OF MEDICINE · PI CHOW, DIANA S-L., MATZUK, MARTIN M. · 2018 to 2021
$1.0M
Pilatus 6mS10OD021832 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ADAMS, PAUL DAVID · 2016 to 2016
$980k
Howard Hughes Medical InstituteNCI NIH HHS P20 CA221729NIGMS NIH HHS P30 GM124169NIH HHS S10 OD021832
6 · The paper itself

Abstract

Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has killed more than 4 million humans globally, but there is no bona fide Food and Drug Administration-approved drug-like molecule to impede the COVID-19 pandemic. The sluggish pace of traditional therapeutic discovery is poorly suited to producing targeted treatments against rapidly evolving viruses. Here, we used an affinity-based screen of 4 billion DNA-encoded molecules en masse to identify a potent class of virus-specific inhibitors of the SARS-CoV-2 main protease (M

Indexed as

AnimalsCells, CulturedCoronavirus 3C ProteasesCOVID-19COVID-19 Drug TreatmentDose-Response Relationship, DrugDrug DiscoveryEnzyme ActivationGenetic EngineeringHumansModels, MolecularMolecular ConformationMolecular StructureProtease InhibitorsSARS-CoV-2Structure-Activity RelationshipCoronavirus 3C ProteasesProtease Inhibitorsantiviralcovalent inhibitorsdrug discovery

Identifiers

PMID34426525
PMCPMC8433497
OpenAlexW3193325964

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.