Evidence map›Paper›PMID 34425895›Full record

ArticleParasites & vectors2021

Genetic diversity and population structure of Rhipicephalus sanguineus sensu lato across different regions of Colombia.

Luisa Páez-Triana, Marina Muñoz, Giovanny Herrera, Darwin A Moreno-Pérez, Gabriel A Tafur-Gómez, Diego Montenegro, Manuel A Patarroyo, Alberto Paniz-Mondolfi, Juan David Ramírez

Abstract read
In one paragraph

Article in Parasites & vectors, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  4. Article
  5. Review
  6. Article
  7. Article
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  9. Article
  10. Ticks infesting humans in Central America: A review of their relevance in public health.Current research in parasitology & vector-borne diseases · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Luisa Páez-TrianaCentro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia.
Marina MuñozCentro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia.
Giovanny HerreraCentro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia.
Darwin A Moreno-PérezUniversidad de Ciencias Aplicadas y Ambientales-U.D.C.A., Bogotá, 111166, Colombia.
Gabriel A Tafur-GómezUniversidad de Ciencias Aplicadas y Ambientales-U.D.C.A., Bogotá, 111166, Colombia.
Diego MontenegroFundación Chilloa, Santa Marta, Colombia.
Manuel A PatarroyoMolecular Biology and Immunology Department, Fundación Instituto de Inmunología de Colombia (FIDIC), Bogotá, Colombia.
Alberto Paniz-MondolfiIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Juan David RamírezCentro de Investigaciones en Microbiología y Biotecnología-UR (CIMBIUR), Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia. juand.ramirez@urosario.edu.co.ORCID http://orcid.org/0000-0002-1344-9312

Funding

UNIVERSIDAD DEL ROSARIO Research fund undergrad students
6 · The paper itself

Abstract

backgroundThere has been a long-standing debate over the taxonomic status of Rhipicephalus sanguineus sensu lato. Different studies worldwide have reported the occurrence of different well-defined lineages, in addition to Rhipicephalus sanguineus sensu stricto. To date, there are very few studies examining the diverse aspects of this tick in Colombia. We assessed the population structure and genetic diversity of R. sanguineus s.l. in eight departmental regions across Colombia.

methodsA total of 170 ticks were collected from dogs in different departments of Colombia. All specimens were morphologically compatible with R. sanguineus s.l. and subjected to genetic analysis. DNA sequences were obtained for the 12S rDNA, cytochrome oxidase I (COI) and internal transcribed spacer 2 (ITS2) markers. A concatenated set of all mitochondrial markers was also constructed. Next, maximum likelihood phylogenetic trees were constructed using the sequences generated herein and sequences available in GenBank. Finally, we assessed different summary statistics and analysed population structure and divergence with Fst and Dxy and demographic changes with Tajima's D and Fu and Li's statistical tests.

resultsAnalysis of the 12S rDNA and COI revealed that all R. sanguineus s.l. specimens collected across different regions of Colombia clustered within the tropical lineage. Micro-geographical analyses showed that the tick population from Amazonas formed a distinct cluster separated from the other sequences, with moderate Fst and Dxy values. However, no signs of a robust population structure were found within the country. The results of Fu's F

conclusionsEvidence provided herein supports the tropical lineage as the main circulating lineage in Colombia, exhibiting a general lack of genetic structure except for the Amazonas region.

Indexed as

Genetic VariationAnimalsColombiaDemographyDNA, IntergenicDogsElectron Transport Complex IVPhylogenyRhipicephalus sanguineusRNA, Ribosomal, 16SSequence Analysis, DNATick Infestationscytochrome o oxidaseDNA, IntergenicElectron Transport Complex IVRNA, Ribosomal, 16SGenetic diversityPhylogenyRhipicephalus sanguineusTickVector-borne diseases

Identifiers

PMID34425895
PMCPMC8383428

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.