Evidence map›Paper›PMID 34425415›Full record

ReviewImmunobiology2021

Genome interaction of the virus and the host genes and non-coding RNAs in SARS-CoV-2 infection.

Juliana M Serpeloni, Quirino Alves Lima Neto, Léia Carolina Lucio, Anelisa Ramão, Jaqueline Carvalho de Oliveira, Daniela Fiori Gradia, Danielle Malheiros, Adriano Ferrasa, Rafael Marchi, David L A Figueiredo and 4 more

Open access · greenAbstract readReview
In one paragraph

Review in Immunobiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 25 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Host factors of SARS-CoV-2 in infection, pathogenesis, and long-term effects.Frontiers in cellular and infection microbiology · 2024
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Spike protein of SARS-CoV-2 variants: a brief review and practical implications.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2022
    Review
  9. Efficacy of mRNA, adenoviral vector, and perfusion protein COVID-19 vaccines.Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie · 2022
    Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 1 country.

Juliana M SerpeloniDepartamento de Biologia Geral, CCB, Universidade Estadual de Londrina, Londrina, PR, Brazil.
Quirino Alves Lima NetoDepartamento de Ciências Básicas da Saúde, CCS, Universidade Estadual de Maringá, Maringá, PR, Brazil.
Léia Carolina LucioPrograma de Pós-graduação em Ciências Aplicadas à Saúde, CCS, Universidade Estadual do Oeste do Paraná, Francisco Beltrão, PR, Brazil.
Anelisa RamãoDepartamento de Ciências Biológicas, Universidade Estadual do Centro-Oeste, Guarapuava, PR, Brazil.
Jaqueline Carvalho de OliveiraDepartamento de Genética, SCB, Universidade Federal do Paraná, PR, Brazil.
Daniela Fiori GradiaDepartamento de Genética, SCB, Universidade Federal do Paraná, PR, Brazil.
Danielle MalheirosDepartamento de Genética, SCB, Universidade Federal do Paraná, PR, Brazil.
Adriano FerrasaDepartamento de Informática, SECATE, Universidade Estadual de Ponta Grossa, Ponta Grossa, PR, Brazil.
Rafael MarchiInstituto de Pesquisa Pelé Pequeno Príncipe, Faculdades Pequeno Príncipe, Curitiba, PR, Brazil.
David L A FigueiredoDepartamento de Medicina, Universidade Estadual do Centro-Oeste, UNICENTRO e Instituto de Pesquisa para o Câncer, IPEC, Guarapuava, PR, Brazil.
Wilson A SilvaDepartamento de Genética, Universidade de São Paulo, Faculdade de Medicina de Ribeirão Preto, SP, e Instituto de Pesquisa para o Câncer, IPEC, Guarapuava, PR, Brazil.
Enilze M S F RibeiroDepartamento de Genética, SCB, Universidade Federal do Paraná, PR, Brazil.
Ilce M S CólusDepartamento de Biologia Geral, CCB, Universidade Estadual de Londrina, Londrina, PR, Brazil.
Luciane R CavalliInstituto de Pesquisa Pelé Pequeno Príncipe, Faculdades Pequeno Príncipe, Curitiba, PR, Brazil. Electronic address: luciane.cavalli@pelepequenoprincipe.org.br.
Universidade Federal do Paraná · BRUniversidade Estadual de Londrina · BRUniversidade Estadual do Centro-Oeste · BRUniversidade de São Paulo · BRUniversidade Estadual de Maringá · BRUniversidade Estadual de Ponta Grossa · BRUniversidade Estadual do Oeste do Paraná · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this review, we highlight the interaction of SARS-CoV-2 virus and host genomes, reporting the current studies on the sequence analysis of SARS-CoV-2 isolates and host genomes from diverse world populations. The main genetic variants that are present in both the virus and host genomes were particularly focused on the ACE2 and TMPRSS2 genes, and their impact on the patients' susceptibility to the virus infection and severity of the disease. Finally, the interaction of the virus and host non-coding RNAs is described in relation to their regulatory roles in target genes and/or signaling pathways critically associated with SARS-CoV-2 infection. Altogether, these studies provide a significant contribution to the knowledge of SARS-CoV-2 mechanisms of infection and COVID-19 pathogenesis. The described genetic variants and molecular factors involved in host/virus genome interactions have significantly contributed to defining patient risk groups, beyond those based on patients' age and comorbidities, and they are promising candidates to be potentially targeted in treatment strategies for COVID-19 and other viral infectious diseases.

Indexed as

GenomeRNA, UntranslatedAngiotensin-Converting Enzyme 2AnimalsCOVID-19Genes, ViralHost-Pathogen InteractionsHumansSARS-CoV-2Serine EndopeptidasesACE2 protein, humanAngiotensin-Converting Enzyme 2RNA, UntranslatedSerine EndopeptidasesTMPRSS2 protein, humanCOVID-19Genetic polymorphismsGenome interactionSARS-CoV-2SNPs, ncRNA, miRNA, lncRNA

Identifiers

PMID34425415
PMCPMC8378551
OpenAlexW3196166067

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.