Evidence map›Paper›PMID 34425109›Full record

ArticleThe Journal of biological chemistry2021

Structural and functional characterization of ubiquitin variant inhibitors for the JAMM-family deubiquitinases STAMBP and STAMBPL1.

Yusong Guo, Qi Liu, Evan Mallette, Cody Caba, Feng Hou, Julia Fux, Gabriel LaPlante, Aiping Dong, Qi Zhang, Hui Zheng and 2 more

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Yusong GuoFisheries College, Guangdong Ocean University, Guangdong, China; Structural Genomics Consortium, University of Toronto, Toronto, Canada.
Qi LiuDepartment of Molecular and Cellular Biology, College of Biological Science, University of Guelph, Guelph, Canada.
Evan MalletteDepartment of Molecular and Cellular Biology, College of Biological Science, University of Guelph, Guelph, Canada.
Cody CabaDepartment of Chemistry and Biochemistry, University of Windsor, Windsor, Canada.
Feng HouStructural Genomics Consortium, University of Toronto, Toronto, Canada.
Julia FuxDepartment of Molecular and Cellular Biology, College of Biological Science, University of Guelph, Guelph, Canada.
Gabriel LaPlanteDepartment of Molecular and Cellular Biology, College of Biological Science, University of Guelph, Guelph, Canada.
Aiping DongStructural Genomics Consortium, University of Toronto, Toronto, Canada.
Qi ZhangStructural Genomics Consortium, University of Toronto, Toronto, Canada.
Hui ZhengJiangsu Key Laboratory of Infection and Immunity, International Institute of Infection and Immunity, Institutes of Biology and Medical Sciences, Soochow University, Suzhou, Jiangsu, China.
Yufeng TongStructural Genomics Consortium, University of Toronto, Toronto, Canada; Department of Chemistry and Biochemistry, University of Windsor, Windsor, Canada. Electronic address: ytong@uwindsor.ca.
Wei ZhangDepartment of Molecular and Cellular Biology, College of Biological Science, University of Guelph, Guelph, Canada; CIFAR Azrieli Global Scholars Program, Canadian Institute for Advanced Research, Toronto, Canada. Electronic address: weizhang@uoguelph.ca.
University of Toronto · CAUniversity of Guelph · CACanadian Institute for Advanced Research · CASoochow University · CNUniversity of Windsor · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ubiquitination is a crucial posttranslational protein modification involved in a myriad of biological pathways. This modification is reversed by deubiquitinases (DUBs) that deconjugate the single ubiquitin (Ub) moiety or poly-Ub chains from substrates. In the past decade, tremendous efforts have been focused on targeting DUBs for drug discovery. However, most chemical compounds with inhibitory activity for DUBs suffer from mild potency and low selectivity. To overcome these obstacles, we developed a phage display-based protein engineering strategy for generating Ub variant (UbV) inhibitors, which was previously successfully applied to the Ub-specific protease (USP) family of cysteine proteases. In this work, we leveraged the UbV platform to selectively target STAMBP, a member of the JAB1/MPN/MOV34 (JAMM) metalloprotease family of DUB enzymes. We identified two UbVs (UbV

Indexed as

Endosomal Sorting Complexes Required for TransportPeptide HydrolasesPeptide LibraryUbiquitinUbiquitin ThiolesteraseCrystallography, X-RayHumansProtease InhibitorsProtein Structure, QuaternaryEndosomal Sorting Complexes Required for TransportPeptide HydrolasesPeptide LibraryProtease InhibitorsSTAMBPL1 protein, humanSTAMBP protein, humanUbiquitinUbiquitin Thiolesterasecrystal structuredeubiquitinasesinhibitorJAMM domainphage displayprotein engineeringSTAMBPubiquitin variants

Identifiers

PMID34425109
PMCPMC8449267
OpenAlexW3194429602

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.