Evidence map›Paper›PMID 34424036›Full record

ArticleJournal of bacteriology2021

VirB4- and VirD4-Like ATPases, Components of a Putative Type 4C Secretion System in Clostridioides difficile.

Julya Sorokina, Irina Sokolova, Ivan Rybolovlev, Natalya Shevlyagina, Vasiliy Troitskiy, Vladimir Zhukhovitsky, Yury Belyi

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Whole-Genome Analysis ofMolecules (Basel, Switzerland) · 2022
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Julya SorokinaGamaleya Research Centre for Epidemiology and Microbiology, Moscow, Russia.
Irina SokolovaGamaleya Research Centre for Epidemiology and Microbiology, Moscow, Russia.
Ivan RybolovlevInstitute for Molecular Genetics, Moscow, Russia.
Natalya ShevlyaginaGamaleya Research Centre for Epidemiology and Microbiology, Moscow, Russia.
Vasiliy TroitskiySechenov Universitygrid.448878.f, Moscow, Russia.
Vladimir ZhukhovitskyGamaleya Research Centre for Epidemiology and Microbiology, Moscow, Russia.
Yury BelyiGamaleya Research Centre for Epidemiology and Microbiology, Moscow, Russia.
Gamalei Institute of Epidemiology and Microbiology · RUInstitute of Molecular Genetics · RUSechenov University · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The type 4 secretion system (T4SS) represents a bacterial nanomachine capable of trans-cell wall transportation of proteins and DNA and has attracted intense interest due to its roles in the pathogenesis of infectious diseases. In the current investigation, we uncovered three distinct gene clusters in Clostridioides difficile strain 630 encoding proteins structurally related to components of the VirB4/D4 type 4C secretion system from Streptococcus suis strain 05ZYH33 and located within sequences of conjugative transposons (CTn). Phylogenic analysis revealed that VirB4- and VirD4-like proteins of the CTn4 locus, on the one hand, and those of the CTn2 and CTn5 loci, on the other hand, fit into separate clades, suggesting specific roles of identified secretion system variants in the physiology of C. difficile. Our further study on VirB4- and VirD4-like products encoded by CTn4 revealed that both proteins possess Mg

Indexed as

Adenosine TriphosphatasesBacterial ProteinsClostridioides difficileGene Expression Regulation, BacterialType IV Secretion SystemsAdenosine TriphosphatasesBacterial ProteinsType IV Secretion SystemsATPaseClostridioides difficilesecretion systemsVirB4VirD4

Identifiers

PMID34424036
PMCPMC8508108
OpenAlexW3177944437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.