Evidence map›Paper›PMID 34423519›Full record

ArticleMolecular plant pathology2021

PhcQ mainly contributes to the regulation of quorum sensing-dependent genes, in which PhcR is partially involved, in Ralstonia pseudosolanacearum strain OE1-1.

Chika Takemura, Wakana Senuma, Kazusa Hayashi, Ayaka Minami, Yuki Terazawa, Chisaki Kaneoka, Megumi Sakata, Min Chen, Yong Zhang, Tatsuya Nobori and 6 more

Open access · goldAbstract read
In one paragraph

Article in Molecular plant pathology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 24 citations in OpenAlex.

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  13. Markerless gene deletion inFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Chika TakemuraFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.
Wakana SenumaFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.
Kazusa HayashiFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.
Ayaka MinamiFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.
Yuki TerazawaFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.
Chisaki KaneokaGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, Japan.
Megumi SakataGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, Japan.
Min ChenCollege of Resources and Environment, Southwest University, Chongqing, China.
Yong ZhangInterdisciplinary Research Center for Agriculture Green Development in Yangtze River Basin, Southwest University, Chongqing, China.ORCID 0000-0003-1820-0927
Tatsuya NoboriSalk Institute for Biological Studies, La Jolla, California, USA.ORCID 0000-0002-1773-3361
Masanao SatoGraduate School of Agriculture, Hokkaido University, Sapporo, Japan.ORCID 0000-0003-3790-8218
Akinori KibaFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.ORCID 0000-0003-3110-3611
Kouhei OhnishiFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.ORCID 0000-0001-7022-8703
Kenichi TsudaState Key Laboratory of Agricultural Microbiology, Interdisciplinary Sciences Research Institute, College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, China.ORCID 0000-0001-7074-0731
Kenji KaiGraduate School of Life and Environmental Sciences, Osaka Prefecture University, Sakai, Japan.ORCID 0000-0002-4036-9959
Yasufumi HikichiFaculty of Agriculture and Marine Science, Kochi University, Nankoku, Japan.ORCID 0000-0002-5955-9197
Kōchi University · JPOsaka Prefecture University · JPSouthwest University · CNHokkaido University · JPHuazhong Agricultural University · CNSalk Institute for Biological Studies · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The gram-negative plant-pathogenic β-proteobacterium Ralstonia pseudosolanacearum strain OE1-1 produces methyl 3-hydroxymyristate as a quorum sensing (QS) signal via the methyltransferase PhcB and senses the chemical through the sensor histidine kinase PhcS. This leads to functionalization of the LysR family transcriptional regulator PhcA, regulating QS-dependent genes responsible for the QS-dependent phenotypes including virulence. The phc operon consists of phcB, phcS, phcR, and phcQ, with the latter two encoding regulator proteins with a receiver domain and a histidine kinase domain and with a receiver domain, respectively. To elucidate the function of PhcR and PhcQ in the regulation of QS-dependent genes, we generated phcR-deletion and phcQ-deletion mutants. Though the QS-dependent phenotypes of the phcR-deletion mutant were largely unchanged, deletion of phcQ led to a significant change in the QS-dependent phenotypes. Transcriptome analysis coupled with quantitative reverse transcription-PCR and RNA-sequencing revealed that phcB, phcK, and phcA in the phcR-deletion and phcQ-deletion mutants were expressed at similar levels as in strain OE1-1. Compared with strain OE1-1, expression of 22.9% and 26.4% of positively and negatively QS-dependent genes, respectively, was significantly altered in the phcR-deletion mutant. However, expression of 96.8% and 66.9% of positively and negatively QS-dependent genes, respectively, was significantly altered in the phcQ-deletion mutant. Furthermore, a strong positive correlation of expression of these QS-dependent genes was observed between the phcQ-deletion and phcA-deletion mutants. Our results indicate that PhcQ mainly contributes to the regulation of QS-dependent genes, in which PhcR is partially involved.

Indexed as

Quorum SensingRalstonia solanacearumBacterial ProteinsGene Expression Regulation, BacterialRalstoniaVirulenceBacterial ProteinsPhcQPhcRquorum sensingRalstonia pseudosolanacearumvirulence

Identifiers

PMID34423519
PMCPMC8578825
OpenAlexW3194489644

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.