Evidence map›Paper›PMID 34420140›Full record

ArticleMolecular biology reports2021

MAP30 transgenic tobacco lines: from silencing to inducing.

Fatemeh Ravanrouy, Ali Niazi, Ali Moghadam, Seyed Mohsen Taghavi

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Article in Molecular biology reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Fatemeh RavanrouyInstitute of Biotechnology, Shiraz University, Shiraz, Iran.
Ali NiaziInstitute of Biotechnology, Shiraz University, Shiraz, Iran. niazi@shirazu.ac.ir.
Ali MoghadamInstitute of Biotechnology, Shiraz University, Shiraz, Iran. ali.moghadam@shirazu.ac.ir.ORCID http://orcid.org/0000-0002-4626-9481
Seyed Mohsen TaghaviDepartment of Plant Protection, School of Agriculture, Shiraz University, Shiraz, Iran.
Shiraz University · IR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDNA methylation is one of the most important epigenetic event that regulates gene expression. In addition to DNA methylation, transgene copy number may induce gene silencing. Therefore, the study of these cases is useful for understanding of gene silencing regulation. METHODS AND

resultsIn this study, the methylation pattern of 35S promoter was investigated in the second generation of MAP30 transgenic tobacco lines. Therefore, the genomic DNA melting curve changes were investigated before and after bisulfite treatment by real time PCR. To determine the exact position of methylation, the samples were sequenced after bisulfite treatment. Observation of decrease in DNA melting curve of expressing line in comparison with silenced line confirmed the presence of DNA methylation in silenced line. In order to induce the MAP30 expression, the silenced line was treated using different concentrations of Azacytidine and green tea extracts. The results showed that all concentrations of green tea extracts for 6 days and the concentrations of 3 and 10 μM Azacytidine for 10 and 3 days could induce the expression of MAP30 in silenced line respectively. Finally, the transgene copy number was estimated using real time PCR, as silenced line contained more than two copies while the lines expressing MAP30 contained only one or two copies.

conclusionsFinally, we found that the presence of DNA methylation and also multiple gene copy numbers in silenced line have been led to gene silencing. Moreover, the effect of green tea extract on DNA methylation showed incredible results for the first time.

Indexed as

Gene SilencingAzacitidineBase SequenceDNA MethylationDNA, PlantGene DosageGene Expression Regulation, PlantNicotianaPlants, Genetically ModifiedPromoter Regions, GeneticSequence Analysis, DNASulfitesTeaTranscription, GeneticTransgenesAzacitidineDNA, Planthydrogen sulfiteSulfitesTeaCopy numberGreen teaMethylationSilencing

Identifiers

PMID34420140
OpenAlexW3194760749

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.