Evidence map›Paper›PMID 34418971›Full record

ArticleBMC plant biology2021

GWAS provides biological insights into mechanisms of the parasitic plant (Striga) resistance in sorghum.

Jacinta Kavuluko, Magdaline Kibe, Irine Sugut, Willy Kibet, Joel Masanga, Sylvia Mutinda, Mark Wamalwa, Titus Magomere, Damaris Odeny, Steven Runo

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
7.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Article
  3. Genome wide association study unveils the genetic basis of Orobanche crenata resistance in pea.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
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  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Resolving intergenotypic Striga resistance in sorghum.Journal of experimental botany · 2023
    Article
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  11. Review
  12. Review
  13. Article
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  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Jacinta KavulukoDepartment of Biochemistry, Microbiology and Biotechnology, Kenyatta University, Nairobi, Kenya.
Magdaline KibeDepartment of Biochemistry, Microbiology and Biotechnology, Kenyatta University, Nairobi, Kenya.
Irine SugutDepartment of Biochemistry, Microbiology and Biotechnology, Kenyatta University, Nairobi, Kenya.
Willy KibetDepartment of Biochemistry, Microbiology and Biotechnology, Kenyatta University, Nairobi, Kenya.
Joel MasangaDepartment of Biochemistry, Microbiology and Biotechnology, Kenyatta University, Nairobi, Kenya.
Sylvia MutindaDepartment of Biochemistry, Microbiology and Biotechnology, Kenyatta University, Nairobi, Kenya.
Mark WamalwaDepartment of Biochemistry, Microbiology and Biotechnology, Kenyatta University, Nairobi, Kenya.
Titus MagomereDepartment of Biochemistry, Microbiology and Biotechnology, Kenyatta University, Nairobi, Kenya.
Damaris OdenyInternational Crops Research Institute for the Semi-Arid Tropics, Nairobi, Kenya.
Steven RunoDepartment of Biochemistry, Microbiology and Biotechnology, Kenyatta University, Nairobi, Kenya. runo.steve@ku.ac.ke.ORCID http://orcid.org/0000-0002-9043-2338
Kenyatta University · KEInternational Crops Research Institute for the Semi-Arid Tropics · KE

Funding

National Research Fund (KE) KU/DVCR/NRF/VOL1/27Regional Universities Forum for Capacity Building in Agriculture (RUFORUM) RU/2016/DRRG/01/010
6 · The paper itself

Abstract

backgroundSorghum yields in sub-Saharan Africa (SSA) are greatly reduced by parasitic plants of the genus Striga (witchweed). Vast global sorghum genetic diversity collections, as well as the availability of modern sequencing technologies, can be potentially harnessed to effectively manage the parasite.

resultsWe used laboratory assays - rhizotrons to screen a global sorghum diversity panel to identify new sources of resistance to Striga; determine mechanisms of resistance, and elucidate genetic loci underlying the resistance using genome-wide association studies (GWAS). New Striga resistant sorghum determined by the number, size and biomass of parasite attachments were identified. Resistance was by; i) mechanical barriers that blocked parasite entry, ii) elicitation of a hypersensitive reaction that interfered with parasite development, and iii) the inability of the parasite to develop vascular connections with hosts. Resistance genes underpinning the resistance corresponded with the resistance mechanisms and included pleiotropic drug resistance proteins that transport resistance molecules; xylanase inhibitors involved in cell wall fortification and hormonal regulators of resistance response, Ethylene Response Factors.

conclusionsOur findings are of fundamental importance to developing durable and broad-spectrum resistance against Striga and have far-reaching applications in many SSA countries where Striga threatens the livelihoods of millions of smallholder farmers that rely on sorghum as a food staple.

Indexed as

GeographyAfrica South of the SaharaEdible GrainGenetic VariationGenome-Wide Association StudyGenotypeHost-Parasite InteractionsPlant DiseasesPlant ImmunityPlant RootsSorghumStrigaGenome-wide association studies (GWAS)Parasitic plantsS. hermonthica (Striga)Sorghum diversity panelStriga resistance

Identifiers

PMID34418971
PMCPMC8379865
OpenAlexW3115454607

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.