Evidence map›Paper›PMID 34417794›Full record

ArticleAnnals of botany2022

Differential modulation of the lipoxygenase cascade during typical and latent Pectobacterium atrosepticum infections.

Vladimir Y Gorshkov, Yana Y Toporkova, Ivan D Tsers, Elena O Smirnova, Anna V Ogorodnikova, Natalia E Gogoleva, Olga I Parfirova, Olga E Petrova, Yuri V Gogolev

Open access · bronzeAbstract read
In one paragraph

Article in Annals of botany, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 14 citations in OpenAlex.

  1. Phosphonates ofInternational journal of molecular sciences · 2024
    Article
  2. Review
  3. Epoxyalcohol Synthase Branch of Lipoxygenase Cascade.Current issues in molecular biology · 2024
    Review
  4. Article
  5. RpoS-Regulated Genes and Phenotypes in the Phytopathogenic BacteriumInternational journal of molecular sciences · 2023
    Article
  6. A Switch from Latent to Typical Infection duringInternational journal of molecular sciences · 2023
    Article
  7. Review
  8. Therapeutic Potential of Plant Oxylipins.International journal of molecular sciences · 2022
    Review
  9. Article
  10. Article
  11. Gene Expression Analysis of Potato (Plants (Basel, Switzerland) · 2022
    Article
  12. Article
  13. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Vladimir Y GorshkovKazan Institute of Biochemistry and Biophysics, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia.ORCID 0000-0002-9577-2032
Yana Y ToporkovaKazan Institute of Biochemistry and Biophysics, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia.
Ivan D TsersLaboratory of Plant Infectious Diseases, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia.
Elena O SmirnovaKazan Institute of Biochemistry and Biophysics, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia.
Anna V OgorodnikovaKazan Institute of Biochemistry and Biophysics, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia.
Natalia E GogolevaKazan Institute of Biochemistry and Biophysics, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia.
Olga I ParfirovaKazan Institute of Biochemistry and Biophysics, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia.
Olga E PetrovaKazan Institute of Biochemistry and Biophysics, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia.
Yuri V GogolevKazan Institute of Biochemistry and Biophysics, Federal Research Center Kazan Scientific Center of Russian Academy of Sciences, 420111 Kazan, Russia.
Kazan Federal University · RUKazan Institute of Biochemistry and Biophysics · RUKazan Scientific Center · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimsPlant diseases caused by Pectobacterium atrosepticum are often accompanied by extensive rot symptoms. In addition, these bacteria are able to interact with host plants without causing disease for long periods, even throughout several host plant generations. There is, to date, no information on the comparative physiology/biochemistry of symptomatic and asymptomatic plant-P. atrosepticum interactions. Typical (symptomatic) P. atrosepticum infections are associated with the induction of plant responses mediated by jasmonates, which are one of the products of the lipoxygenase cascade that gives origin to many other oxylipins with physiological activities. In this study, we compared the functioning of the lipoxygenase cascade following typical and latent (asymptomatic) infections to gain better insight into the physiological basis of the asymptomatic and antagonistic coexistence of plants and pectobacteria.

methodsTobacco plants were mock-inoculated (control) or infected with the wild type P. atrosepticum (typical infection) or its coronafacic acid-deficient mutant (latent infection). The expression levels of the target lipoxygenase cascade-related genes were assessed by Illumina RNA sequencing. Oxylipin profiles were analysed by GC-MS. With the aim of revising the incorrect annotation of one of the target genes, its open reading frame was cloned to obtain the recombinant protein, which was further purified and characterized using biochemical approaches. KEY

resultsThe obtained data demonstrate that when compared to the typical infection, latent asymptomatic P. atrosepticum infection is associated with (and possibly maintained due to) decreased levels of 9-lipoxygenase branch products and jasmonic acid and increased level of cis-12-oxo-10,15-phytodienoic acid. The formation of 9-oxononanoic acid and epoxyalcohols in tobacco plants was based on the identification of the first tobacco hydroperoxide lyase (HPL) with additional epoxyalcohol synthase (EAS) activity.

conclusionsOur results contribute to the hypothesis of the oxylipin signature, indicating that different types of plant interactions with a particular pathogen are characterized by the different oxylipin profiles of the host plant. In addition, the tobacco LOC107825278 gene was demonstrated to encode an NtHPL (CYP74C43) enzyme yielding volatile aldehydes and aldoacids (HPL products) as well as oxiranyl carbinols (EAS products).

Indexed as

LipoxygenasePectobacteriumNicotianaPlant DiseasesLipoxygenaseLatent and typical infectionslipoxygenase cascadeoxylipinsPectobacteriumplant soft rots

Identifiers

PMID34417794
PMCPMC8835645
OpenAlexW3195074978

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.