Evidence map›Paper›PMID 34417755›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Methods for Characterization of Alternative RNA Splicing.

Samuel E Harvey, Jingyi Lyu, Chonghui Cheng

Abstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Multiomics analysis of the NADGenes & development · 2022
    Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Samuel E HarveyLester & Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA.
Jingyi LyuLester & Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA.
Chonghui ChengLester & Sue Smith Breast Center, Baylor College of Medicine, Houston, TX, USA. chonghui.cheng@BCM.edu.

Funding

Regulation of alternative splicing during epithelial-mesenchymal transitionR35GM131876 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Chonghui Cheng · 2019 to 2026
$3.9M
Investigating the mechanisms of CD44s splice isoform in breast cancer metastasisR01CA182467 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHENG, CHONGHUI · 2014 to 2018
$1.6M
NCI NIH HHS R01 CA182467NIGMS NIH HHS R35 GM131876
6 · The paper itself

Abstract

Quantification of alternative splicing to detect the abundance of differentially spliced isoforms of a gene in total RNA can be accomplished via RT-PCR using both quantitative real-time and semiquantitative PCR methods. These methods require careful PCR primer design to ensure specific detection of particular splice isoforms. We will also describe analysis of alternative splicing using a splicing "minigene" in mammalian cell tissue culture to facilitate investigation of the regulation of alternative splicing of a particular exon of interest.

Indexed as

Alternative SplicingAnimalsExonsProtein IsoformsRNA SplicingProtein IsoformsAlternative splicingMinigeneRNART-PCRSplicing factorsSplicing regulationVariable exon

Identifiers

PMID34417755
PMCPMC8916221

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.