Evidence map›Paper›PMID 34417748›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

Highly Resolved Detection of Long Non-coding RNAs In Situ.

Megan Trotter, Clair Harris, Marissa Cloutier, Milan Samanta, Sundeep Kalantry

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.8field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Megan TrotterDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, 48105-1536, MI, USA.
Clair HarrisDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, 48105-1536, MI, USA.
Marissa CloutierDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, 48105-1536, MI, USA.
Milan SamantaDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, 48105-1536, MI, USA.
Sundeep KalantryDepartment of Human Genetics, University of Michigan Medical School, Ann Arbor, 48105-1536, MI, USA. Kalantry@umich.edu.
University of Michigan–Ann Arbor · US

Funding

PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
X-chromosome Inactivation Catalyzed by Genes That Escape X-inactivationR01GM124571 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SUNDEEP KALANTRY · 2017 to 2026
$3.2M
Investigating Novel Modes of Epigenetic Regulation Through the Polycomb GroupR01HD095463 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KALANTRY, SUNDEEP · 2018 to 2022
$2.4M
Initiation of Epigenetic Transcriptional RegulationDP2OD008646 · OD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KALANTRY, SUNDEEP · 2011 to 2011
$2.3M
Career Training in Reproductive BiologyT32HD079342 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Suzanne M MOENTER · 2014 to 2026
$2.3M
NICHD NIH HHS R01 HD095463NICHD NIH HHS T32 HD079342NIGMS NIH HHS R01 GM124571NIGMS NIH HHS T32 GM007544NIH HHS DP2 OD008646
6 · The paper itself

Abstract

Long non-coding RNAs (lncRNAs) have been postulated to function in a number of DNA-based processes, most notably transcription. The detection of lncRNAs in situ can offer insights into their function. Fluorescence in situ hybridization (FISH) enables the detection of specific nucleic acid sequences, including lncRNAs, within individual cells. Current RNA FISH techniques can inform both the localization and expression level of RNA transcripts. Together with advances in microscopy, these in situ techniques now allow for visualization and quantification of even lowly expressed or unstable lncRNAs. When combined with detection of associated proteins and chromatin modifications by immunofluorescence, RNA FISH can lend essential insights into lncRNA function. Here, we describe an integrated set of protocols to detect, individually or in combination, specific RNAs, DNAs, proteins, and histone modifications in single cells at high sensitivity using conventional fluorescence microscopy.

Indexed as

DNAFluorescent Antibody TechniqueIn Situ Hybridization, FluorescenceMicroscopy, FluorescenceProteinsRNA, Long NoncodingDNAProteinsRNA, Long NoncodingChromatinDNA FISHFluorescence in situ hybridizationHistone modificationsImmunofluorescenceLong non-coding RNAsRNA FISH

Identifiers

PMID34417748
PMCPMC8445192
OpenAlexW3195783079

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.