Evidence map›Paper›PMID 34417660›Full record

ArticleJournal of assisted reproduction and genetics2021

Single cell analysis of DNA in more than 10,000 individual sperm from men with abnormal reproductive outcomes.

Angela Q Leung, Avery Davis Bell, Curtis J Mello, Alan S Penzias, Steven A McCarroll, Denny Sakkas

Open access · greenAbstract readComparative Study
In one paragraph

Article in Journal of assisted reproduction and genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Angela Q LeungBoston IVF, Boston, MA, USA. angela.q.leung@gmail.com.
Avery Davis BellDepartment of Genetics, Harvard Medical School, Boston, MA, USA.
Curtis J MelloDepartment of Genetics, Harvard Medical School, Boston, MA, USA.
Alan S PenziasBoston IVF, Boston, MA, USA.
Steven A McCarrollDepartment of Genetics, Harvard Medical School, Boston, MA, USA.
Denny SakkasBoston IVF, Boston, MA, USA.
Boston IVF · USBeth Israel Deaconess Medical Center · USBroad Institute · USGeorgia Institute of Technology · USHarvard University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThis pilot study sought to (1) validate the use of a novel technology for single-sperm-cell genome sequencing (Sperm-seq) in infertile men who may not have optimal quantity or quality of sperm for genomic analysis and (2) compare these results to fertile donors.

methodsInfertile men undergoing IVF with female partners with a previous history of failed fertilization with ICSI (FF) or poor blastulation of embryos (PB) were recruited from a large IVF center. Sperm-seq was used to analyze thousands of individual sperm and was carried out at an affiliated university research institute. Global aneuploidy rate, crossover locations, and crossover frequencies were assessed in the infertile population, and compared with a control group of 20 fertile donors, which were analyzed previously at the same laboratory.

resultsEight patients were initially included, but 3 samples did not yield high-quality genomic data for analysis. A total of 10,042 sperm were analyzed from 5 patients, 2 in the FF group, and 3 in the PB group. The global aneuploidy rate among the samples was 2-4%, similar to the control group. Likewise, crossover locations and frequencies were similar.

conclusionSperm-seq provides a robust analysis but may not be applicable to all male infertility cases due to technical limitations. This group of male infertility patients did not have higher rates of aneuploidy or abnormal crossover patterns compared to a fertile donor population. Our data may suggest that FF and PB phenotypes may not be related to sperm aneuploidy or meiotic errors but rather to other intrinsic nuclear anomalies.

Indexed as

AneuploidyGenetic MarkersAdultFemaleFertilization in VitroGene Expression ProfilingGenetic Predisposition to DiseaseHumansInfertility, MaleMalePilot ProjectsPregnancyPregnancy RateRetrospective StudiesSingle-Cell AnalysisSpermatozoaGenetic MarkersMale infertilityMicrofluidicsSingle cell genome sequencingSperm aneuploidy

Identifiers

PMID34417660
PMCPMC8608944
OpenAlexW3194337542

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.