Evidence map›Paper›PMID 34417450›Full record

ArticleNature communications2021

Histone H4 lysine 20 mono-methylation directly facilitates chromatin openness and promotes transcription of housekeeping genes.

Muhammad Shoaib, Qinming Chen, Xiangyan Shi, Nidhi Nair, Chinmayi Prasanna, Renliang Yang, David Walter, Klaus S Frederiksen, Hjorleifur Einarsson, J Peter Svensson and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 75 papers.

0numbers the graph read from it
0cells of the map it votes in
75citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

75 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Epigenetic alterations in Myeloid Malignancies.Advances in experimental medicine and biology · 2026
    Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Interrogating the regulatory epigenome of cellular senescence.Cellular and molecular life sciences : CMLS · 2025
    Review
  20. Article

15 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Muhammad Shoaib *Biotech Research and Innovation Centre, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.ORCID 0000-0003-1296-5005
Qinming Chen *School of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
Xiangyan ShiSchool of Physical and Mathematical Sciences, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0002-3784-5889
Nidhi NairBiotech Research and Innovation Centre, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Chinmayi PrasannaSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0002-2219-9781
Renliang YangSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.
David WalterBiotech Research and Innovation Centre, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
Klaus S FrederiksenGlobal Drug Discovery, Novo Nordisk A/S, Måløv, Denmark.ORCID 0000-0002-2725-1139
Hjorleifur EinarssonBiotech Research and Innovation Centre, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.
J Peter SvenssonDepartment of Biosciences and Nutrition, Karolinska Institute, Huddinge, Sweden.ORCID 0000-0002-5863-6250
Chuan Fa LiuSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore.ORCID 0000-0001-7433-2081
Karl EkwallDepartment of Biosciences and Nutrition, Karolinska Institute, Huddinge, Sweden.
Mads LerdrupCenter for Chromosome Stability, Department of Cellular and Molecular Medicine, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark. mlerdrup@sund.ku.dk.ORCID 0000-0002-7730-8973
Lars NordenskiöldSchool of Biological Sciences, Nanyang Technological University, Singapore, Singapore. larsnor@ntu.edu.sg.ORCID 0000-0002-3681-209X
Claus S SørensenBiotech Research and Innovation Centre, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark. claus.storgaard@bric.ku.dk.ORCID 0000-0001-6022-9710

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone lysine methylations have primarily been linked to selective recruitment of reader or effector proteins that subsequently modify chromatin regions and mediate genome functions. Here, we describe a divergent role for histone H4 lysine 20 mono-methylation (H4K20me1) and demonstrate that it directly facilitates chromatin openness and accessibility by disrupting chromatin folding. Thus, accumulation of H4K20me1 demarcates highly accessible chromatin at genes, and this is maintained throughout the cell cycle. In vitro, H4K20me1-containing nucleosomal arrays with nucleosome repeat lengths (NRL) of 187 and 197 are less compact than unmethylated (H4K20me0) or trimethylated (H4K20me3) arrays. Concordantly, and in contrast to trimethylated and unmethylated tails, solid-state NMR data shows that H4K20 mono-methylation changes the H4 conformational state and leads to more dynamic histone H4-tails. Notably, the increased chromatin accessibility mediated by H4K20me1 facilitates gene expression, particularly of housekeeping genes. Altogether, we show how the methylation state of a single histone H4 residue operates as a focal point in chromatin structure control. While H4K20me1 directly promotes chromatin openness at highly transcribed genes, it also serves as a stepping-stone for H4K20me3-dependent chromatin compaction.

Indexed as

Genes, EssentialTranscription, GeneticAmino Acid SequenceAnimalsCell CycleCell LineChromatinHistone-Lysine N-MethyltransferaseHistonesHumansLysineMagnetic Resonance SpectroscopyMethylationMiceModels, BiologicalNucleosomesChromatinHistone-Lysine N-MethyltransferaseHistonesKMT5A protein, humanLysineNucleosomes

Identifiers

PMID34417450
PMCPMC8379281

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.