Evidence map›Paper›PMID 34416857›Full record

ArticleBMC plant biology2021

Transcriptomics of different tissues of blueberry and diversity analysis of rhizosphere fungi under cadmium stress.

Shaopeng Chen, QianQian Zhuang, XiaoLei Chu, ZhiXin Ju, Tao Dong, Yuan Ma

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Shaopeng ChenCollege of Agriculture, Jilin Agricultural Science and Technology University, Jilin, 132101, PR China. 408436788@qq.com.
QianQian ZhuangCollege of Agriculture, Jilin Agricultural Science and Technology University, Jilin, 132101, PR China.
XiaoLei ChuDesign Office, Jilin Greening Management Center, Jilin, 132011, PR China.
ZhiXin JuCollege of Agriculture, Jilin Agricultural Science and Technology University, Jilin, 132101, PR China.
Tao DongCollege of Agriculture, Jilin Agricultural Science and Technology University, Jilin, 132101, PR China.
Yuan MaCollege of Agriculture, Jilin Agricultural Science and Technology University, Jilin, 132101, PR China.
Jilin Agricultural Science and Technology University · CNHealth Commission of Jilin Province · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Blueberry (Vaccinium ssp.) is a perennial shrub belonging to the family Ericaceae, which is highly tolerant of acid soils and heavy metal pollution. In the present study, blueberry was subjected to cadmium (Cd) stress in simulated pot culture. The transcriptomics and rhizosphere fungal diversity of blueberry were analyzed, and the iron (Fe), manganese (Mn), copper (Cu), zinc (Zn) and cadmium (Cd) content of blueberry tissues, soil and DGT was determined. A correlation analysis was also performed. A total of 84 374 annotated genes were identified in the root, stem, leaf and fruit tissue of blueberry, of which 3370 were DEGs, and in stem tissue, of which 2521 were DEGs. The annotation data showed that these DEGs were mainly concentrated in a series of metabolic pathways related to signal transduction, defense and the plant-pathogen response. Blueberry transferred excess Cd from the root to the stem for storage, and the highest levels of Cd were found in stem tissue, consistent with the results of transcriptome analysis, while the lowest Cd concentration occurred in the fruit, Cd also inhibited the absorption of other metal elements by blueberry. A series of genes related to Cd regulation were screened by analyzing the correlation between heavy metal content and transcriptome results. The roots of blueberry rely on mycorrhiza to absorb nutrients from the soil. The presence of Cd has a significant effect on the microbial community composition of the blueberry rhizosphere. The fungal family Coniochaetaceae, which is extremely extremelytolerant, has gradually become the dominant population. The results of this study increase our understanding of the plant regulation mechanism for heavy metals, and suggest potential methods of soil remediation using blueberry.

Indexed as

Adaptation, PhysiologicalBiodiversityBlueberry PlantsCadmiumCopperCrops, AgriculturalGene Expression ProfilingIronMagnesiumMycorrhizaePlant RootsRhizosphereTranscriptomeZincCadmiumCopperIronMagnesiumZincBlueberryCadmiumHeavy metal absorptionMicrobial diversityTranscriptomics

Identifiers

PMID34416857
PMCPMC8379848
OpenAlexW3195499636

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.