Evidence map›Paper›PMID 34414351›Full record

ArticleJournal of open source software2021

mikropml: User-Friendly R Package for Supervised Machine Learning Pipelines.

Begüm D Topçuoğlu, Zena Lapp, Kelly L Sovacool, Evan Snitkin, Jenna Wiens, Patrick D Schloss

Abstract read
In one paragraph

Article in Journal of open source software, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

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  6. Unlocking the Metagenome: Pipeline for Microbiome Data Analysis.Methods in molecular biology (Clifton, N.J.) · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Begüm D TopçuoğluDepartment of Microbiology & Immunology, University of Michigan.
Zena LappDepartment of Computational Medicine & Bioinformatics, University of Michigan.
Kelly L SovacoolDepartment of Computational Medicine & Bioinformatics, University of Michigan.
Evan SnitkinDepartment of Microbiology & Immunology, University of Michigan.
Jenna WiensDepartment of Electrical Engineering & Computer Science, University of Michigan.
Patrick D SchlossDepartment of Microbiology & Immunology, University of Michigan.

Funding

University of Michigan Training Program in Genomic ScienceT32HG000040 · NHGRI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Sebastian Zoellner · 1995 to 2026
$16.4M
Systems biology of Clostridium difficile infectionU01AI124255 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SCHLOSS, PATRICK DAVID, YOUNG, VINCENT B · 2016 to 2020
$9.8M
Training Program in BioinformaticsT32GM070449 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI ATHEY, BRIAN DAVID, BURMEISTER, MARGIT · 2005 to 2020
$3.6M
Regional genomic epidemiology to identify drivers of resistance, transmission and infection with carbapenem-resistant Klebsiella pneumoniaeR01AI148259 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SNITKIN, EVAN · 2020 to 2023
$2.2M
Identification of Microbiome Based Markers to Improve Colorectal Cancer DetectionR01CA215574 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RUFFIN, MACK T., SCHLOSS, PATRICK DAVID · 2018 to 2021
$1.4M
NCI NIH HHS R01 CA215574NHGRI NIH HHS T32 HG000040NIAID NIH HHS R01 AI148259NIAID NIH HHS U01 AI124255NIGMS NIH HHS T32 GM070449
6 · The paper itself

Abstract

Machine learning (ML) for classification and prediction based on a set of features is used to make decisions in healthcare, economics, criminal justice and more. However, implementing an ML pipeline including preprocessing, model selection, and evaluation can be time-consuming, confusing, and difficult. Here, we present mikropml (prononced "meek-ROPE em el"), an easy-to-use R package that implements ML pipelines using regression, support vector machines, decision trees, random forest, or gradient-boosted trees. The package is available on GitHub, CRAN, and conda.

Identifiers

PMID34414351
PMCPMC8372219

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.