Evidence map›Paper›PMID 34413515›Full record

ArticleNature neuroscience2021

Neuroinflammatory astrocyte subtypes in the mouse brain.

Philip Hasel, Indigo V L Rose, Jessica S Sadick, Rachel D Kim, Shane A Liddelow

Abstract read
PubMed Publisher
In one paragraph

Article in Nature neuroscience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 369 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
369citing papers in PubMed, 1 pooled it
43.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

369 citing papers in PubMed, 1 synthesis or guideline pooled it, 557 citations in OpenAlex.

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309 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Philip HaselNeuroscience Institute, NYU Grossman School of Medicine, New York, NY, USA. philip.hasel@nyulangone.org.ORCID http://orcid.org/0000-0003-4378-3685
Indigo V L RoseNeuroscience Institute, NYU Grossman School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0003-0491-1269
Jessica S SadickNeuroscience Institute, NYU Grossman School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0001-9957-3711
Rachel D KimNeuroscience Institute, NYU Grossman School of Medicine, New York, NY, USA.ORCID http://orcid.org/0000-0001-6361-6206
Shane A LiddelowNeuroscience Institute, NYU Grossman School of Medicine, New York, NY, USA. shane.liddelow@nyulangone.org.ORCID http://orcid.org/0000-0002-0840-1437
New York University · US

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Postdoctoral Research Training in Neurodegenerative Disorders and the Aging BrainT32AG052909 · NIA · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Helen E Scharfman, THOMAS M WISNIEWSKI · 2017 to 2026
$2.5M
NCI NIH HHS P30 CA016087NIA NIH HHS T32 AG052909
6 · The paper itself

Abstract

Astrocytes undergo an inflammatory transition after infections, acute injuries and chronic neurodegenerative diseases. How this transition is affected by time and sex, its heterogeneity at the single-cell level and how sub-states are spatially distributed in the brain remains unclear. In this study, we investigated transcriptome changes of mouse cortical astrocytes after an acute inflammatory stimulus using the bacterial cell wall endotoxin lipopolysaccharide. We identified fast transcriptomic changes in astrocytes occurring within hours that drastically change over time. By sequencing ~80,000 astrocytes at single-cell resolution, we show that inflammation causes a widespread response with subtypes of astrocytes undergoing distinct inflammatory transitions with defined transcriptomic profiles. We also attribute key sub-states of inflammation-induced reactive astrocytes to specific brain regions using spatial transcriptomics and in situ hybridization. Together, our datasets provide a powerful resource for profiling astrocyte heterogeneity and will be useful for understanding the biological importance of regionally constrained reactive astrocyte sub-states.

Indexed as

AnimalsAstrocytesBrainCells, CulturedEncephalitisFemaleGene Expression ProfilingIn Situ HybridizationInterferonsLipopolysaccharidesMaleMiceRatsRats, Sprague-DawleySequence Analysis, RNATranscriptomeInterferonsLipopolysaccharides

Identifiers

PMID34413515
OpenAlexW3194004635

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.