ArticleThe ISME journal2022
Network structure of resource use and niche overlap within the endophytic microbiome.
Article in The ISME journal, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 27 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
27 citing papers in PubMed.
- Niche Construction: A Rational Engineering Strategy for Regulating Microbial Assembly to Enhance Flavor and Bioactivity of Fermented Foods.Comprehensive reviews in food science and food safety · 2026Review
- Elevational constraints and climatic buffering: comparison of Pierinae and Coliadinae across Taiwan Island and mainland China.Frontiers in zoology · 2026Article
- Oxygen Minimum Zone and Organic Carbon Structure Benthic Prokaryotic Communities and Metabolism in Warm Deep-Red Sea Sediments.Microorganisms · 2026Article
- Substrate utilization and cross-feeding synergistically determine microbiome resistance to pathogen invasion.Nature ecology & evolution · 2026Article
- Potentiators empower synthetic microbiomes as silent guardians against co-contamination.Nature communications · 2025Article
- Distinctive structure of endophytic microbial communities in two species of wild and cultivated rice.Microbiology spectrum · 2025Article
- Downscaling mutualistic networks from species to individuals reveals consistent interaction niches and roles within plant populations.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Ecological features of microbial community linked to stochastic and deterministic assembly processes in acid mine drainage.Applied and environmental microbiology · 2025Article
- Shifts in Structure and Assembly Processes of Root Endophytic Community Caused by Climate Warming and Precipitation Increase in Alpine Grassland.Microorganisms · 2024Article
- Community interactions among microbes give rise to host-microbiome mutualisms in an aquatic plant.mBio · 2024Article
- Interplay of biotic and abiotic factors shapes tree seedling growth and root-associated microbial communities.Communications biology · 2024Article
- Community ecological succession of endophytic fungi associates with medicinal compound accumulation inMicrobiology spectrum · 2024Article
- Soil nutrient amendment increases the potential for inter-kingdom resource competition among foliar endophytes.ISME communications · 2024Article
- The process of nitrogen-adaptation root endophytic bacterial rather than phosphorus-adaptation fungal subcommunities construction unveiled the tomato yield improvement under long-term fertilization.Frontiers in microbiology · 2024Article
- Metagenomics reveals the response of desert steppe microbial communities and carbon-nitrogen cycling functional genes to nitrogen deposition.Frontiers in microbiology · 2024Article
- Plant Growth-Promoting Bacteria of Soil: Designing of Consortia Beneficial for Crop Production.Microorganisms · 2023Review
- The Difference in Diversity between Endophytic Microorganisms in White and GreyJournal of fungi (Basel, Switzerland) · 2023Article
- Unbalanced diets enhance the complexity of gut microbial network but destabilize its stability and resistance.Stress biology · 2023Article
- Root Niches of Blueberry Imprint Increasing Bacterial-Fungal Interkingdom Interactions along the Soil-Rhizosphere-Root Continuum.Microbiology spectrum · 2023Article
- Culturable endophytic fungi community structure isolated from Codonopsis pilosula roots and effect of season and geographic location on their structures.BMC microbiology · 2023Article
Corrections and comments
- Erratum issued
Authors and funding
9 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Endophytes often have dramatic effects on their host plants. Characterizing the relationships among members of these communities has focused on identifying the effects of single microbes on their host, but has generally overlooked interactions among the myriad microbes in natural communities as well as potential higher-order interactions. Network analyses offer a powerful means for characterizing patterns of interaction among microbial members of the phytobiome that may be crucial to mediating its assembly and function. We sampled twelve endophytic communities, comparing patterns of niche overlap between coexisting bacteria and fungi to evaluate the effect of nutrient supplementation on local and global competitive network structure. We found that, despite differences in the degree distribution, there were few significant differences in the global network structure of niche-overlap networks following persistent nutrient amendment. Likewise, we found idiosyncratic and weak evidence for higher-order interactions regardless of nutrient treatment. This work provides a first-time characterization of niche-overlap network structure in endophytic communities and serves as a framework for higher-resolution analyses of microbial interaction networks as a consequence and a cause of ecological variation in microbiome function.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.