Evidence map›Paper›PMID 34413298›Full record

ArticleNature communications2021

Somatic genetic rescue of a germline ribosome assembly defect.

Shengjiang Tan, Laëtitia Kermasson, Christine Hilcenko, Vasileios Kargas, David Traynor, Ahmed Z Boukerrou, Norberto Escudero-Urquijo, Alexandre Faille, Alexis Bertrand, Maxim Rossmann and 27 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
10.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 72 citations in OpenAlex.

  1. Review
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  12. Update on Recommendations for Surveillance for Children with Predisposition to Hematopoietic Malignancy.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Clonal evolution in inherited marrow failure syndromes predicts disease progression.Hematology. American Society of Hematology. Education Program · 2023
    Review
  18. SBDSLife science alliance · 2023
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

37 authors at 9 institutions in 7 countries.

Shengjiang Tan *Cambridge Institute for Medical Research, Cambridge Biomedical Campus Keith Peters Building, Hills Rd, Cambridge, United Kingdom.
Laëtitia Kermasson *Université de Paris, Imagine Institute, Laboratory of Genome Dynamics in the Immune System, Equipe Labellisée Ligue contre le Cancer, INSERM UMR 1163, Paris, France.
Christine HilcenkoCambridge Institute for Medical Research, Cambridge Biomedical Campus Keith Peters Building, Hills Rd, Cambridge, United Kingdom.
Vasileios KargasCambridge Institute for Medical Research, Cambridge Biomedical Campus Keith Peters Building, Hills Rd, Cambridge, United Kingdom.
David TraynorCambridge Institute for Medical Research, Cambridge Biomedical Campus Keith Peters Building, Hills Rd, Cambridge, United Kingdom.
Ahmed Z BoukerrouCambridge Institute for Medical Research, Cambridge Biomedical Campus Keith Peters Building, Hills Rd, Cambridge, United Kingdom.
Norberto Escudero-UrquijoCambridge Institute for Medical Research, Cambridge Biomedical Campus Keith Peters Building, Hills Rd, Cambridge, United Kingdom.ORCID http://orcid.org/0000-0002-8201-5884
Alexandre FailleCambridge Institute for Medical Research, Cambridge Biomedical Campus Keith Peters Building, Hills Rd, Cambridge, United Kingdom.
Alexis BertrandUniversité de Paris, Imagine Institute, Laboratory of Genome Dynamics in the Immune System, Equipe Labellisée Ligue contre le Cancer, INSERM UMR 1163, Paris, France.
Maxim RossmannCambridge Institute for Medical Research, Cambridge Biomedical Campus Keith Peters Building, Hills Rd, Cambridge, United Kingdom.
Beatriz GoyenecheaDepartment of Haematology, University of Cambridge School of Clinical Medicine, Jeffrey Cheah Biomedical Centre, Puddicombe Way, Cambridge Biomedical Campus, Cambridge, UK.
Li JinDepartment of Haematology, University of Cambridge School of Clinical Medicine, Jeffrey Cheah Biomedical Centre, Puddicombe Way, Cambridge Biomedical Campus, Cambridge, UK.
Jonathan MoreilUniversité de Paris, Imagine Institute, Laboratory of Genome Dynamics in the Immune System, Equipe Labellisée Ligue contre le Cancer, INSERM UMR 1163, Paris, France.
Olivier AlibeuINSERM Unité Mixte de Recherche 1163, Structure Fédérative de Recherche Necker INSERM US24/CNRS UMS3633, Genomic Core Facility, Paris Descartes-Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Blandine BeaupainFrench Neutropenia Registry, Assistance Publique-Hôpitaux de Paris, Trousseau Hospital, Paris, France.
Christine Bôle-FeysotINSERM Unité Mixte de Recherche 1163, Structure Fédérative de Recherche Necker INSERM US24/CNRS UMS3633, Genomic Core Facility, Paris Descartes-Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Stefano FumagalliInstitut Necker Enfants Malades, Paris, France.
Sophie KaltenbachUniversité Paris Descartes, Faculté de Médecine Sorbonne Paris Cité, Paris, France.
Jean-Alain MartignolesSorbonne Université, Inserm, Centre de Recherche Saint-Antoine, AP-HP, Hôpital Saint-Antoine, Hématologie Biologique, Paris, France.
Cécile MassonINSERM Unité Mixte de Recherche 1163, Bioinformatics Platform, Paris Descartes-Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Patrick NitschkéINSERM Unité Mixte de Recherche 1163, Bioinformatics Platform, Paris Descartes-Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Mélanie ParisotINSERM Unité Mixte de Recherche 1163, Structure Fédérative de Recherche Necker INSERM US24/CNRS UMS3633, Genomic Core Facility, Paris Descartes-Sorbonne Paris Cité University, Imagine Institute, Paris, France.ORCID http://orcid.org/0000-0003-4312-2035
Aurore PoulietINSERM Unité Mixte de Recherche 1163, Structure Fédérative de Recherche Necker INSERM US24/CNRS UMS3633, Genomic Core Facility, Paris Descartes-Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Isabelle Radford-WeissUniversité Paris Descartes, Faculté de Médecine Sorbonne Paris Cité, Paris, France.
Frédéric ToresINSERM Unité Mixte de Recherche 1163, Bioinformatics Platform, Paris Descartes-Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Jean-Pierre de VillartayUniversité de Paris, Imagine Institute, Laboratory of Genome Dynamics in the Immune System, Equipe Labellisée Ligue contre le Cancer, INSERM UMR 1163, Paris, France.
Mohammed ZarhrateINSERM Unité Mixte de Recherche 1163, Structure Fédérative de Recherche Necker INSERM US24/CNRS UMS3633, Genomic Core Facility, Paris Descartes-Sorbonne Paris Cité University, Imagine Institute, Paris, France.
Ai Ling KohDepartment of Paediatrics, KK Women's and Children's Hospital, Singapore, Singapore.
Kong Boo PhuaDepartment of Paediatrics, KK Women's and Children's Hospital, Singapore, Singapore.
Bruno ReversadeGenome Institute of Singapore, A*STAR, Biopolis, Singapore, Singapore.ORCID http://orcid.org/0000-0002-4070-7997
Peter J BondBioinformatics Institute (A*STAR), Singapore, Singapore.ORCID http://orcid.org/0000-0003-2900-098X
Christine Bellanné-ChantelotDepartment of Genetics, Pitié-Salpêtrière Hospital, Sorbonne University, Paris, France.ORCID http://orcid.org/0000-0001-8415-6771
Isabelle CallebautSorbonne Université, Muséum National d'Histoire Naturelle, UMR CNRS 7590, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, IMPMC, Paris, France.
François DelhommeauSorbonne Université, Inserm, Centre de Recherche Saint-Antoine, AP-HP, Hôpital Saint-Antoine, Hématologie Biologique, Paris, France.
Jean DonadieuService d'Hémato-Oncologie Pédiatrique, Assistance Publique-Hôpitaux de Paris Hôpital Trousseau, Registre des neutropénies-Centre de référence des neutropénies chroniques, Paris, France.
Alan J WarrenCambridge Institute for Medical Research, Cambridge Biomedical Campus Keith Peters Building, Hills Rd, Cambridge, United Kingdom. ajw1000@cam.ac.uk.ORCID http://orcid.org/0000-0001-9277-4553
Patrick RevyUniversité de Paris, Imagine Institute, Laboratory of Genome Dynamics in the Immune System, Equipe Labellisée Ligue contre le Cancer, INSERM UMR 1163, Paris, France. patrick.revy@inserm.fr.ORCID http://orcid.org/0000-0003-0758-8022
Délégation Paris 5 · FRWellcome/MRC Cambridge Stem Cell Institute · GBInserm · FRSorbonne Université · FRAgency for Science, Technology and Research · SGSingHealth Duke-NUS Academic Medical Centre · SGCentre National de la Recherche Scientifique · FRMRC Laboratory of Molecular Biology · GBUniversity of Cambridge · GB

Funding

Medical Research Council MR/T012412/1Wellcome TrustWellcome Trust 100140
6 · The paper itself

Abstract

Indirect somatic genetic rescue (SGR) of a germline mutation is thought to be rare in inherited Mendelian disorders. Here, we establish that acquired mutations in the EIF6 gene are a frequent mechanism of SGR in Shwachman-Diamond syndrome (SDS), a leukemia predisposition disorder caused by a germline defect in ribosome assembly. Biallelic mutations in the SBDS or EFL1 genes in SDS impair release of the anti-association factor eIF6 from the 60S ribosomal subunit, a key step in the translational activation of ribosomes. Here, we identify diverse mosaic somatic genetic events (point mutations, interstitial deletion, reciprocal chromosomal translocation) in SDS hematopoietic cells that reduce eIF6 expression or disrupt its interaction with the 60S subunit, thereby conferring a selective advantage over non-modified cells. SDS-related somatic EIF6 missense mutations that reduce eIF6 dosage or eIF6 binding to the 60S subunit suppress the defects in ribosome assembly and protein synthesis across multiple SBDS-deficient species including yeast, Dictyostelium and Drosophila. Our data suggest that SGR is a universal phenomenon that may influence the clinical evolution of diverse Mendelian disorders and support eIF6 suppressor mimics as a therapeutic strategy in SDS.

Indexed as

MutationAdolescentAdultAnimalsBiological PhenomenaCells, CulturedChildChild, PreschoolDictyosteliumDrosophilaEukaryotic Initiation FactorsGerm CellsHumansInfantMolecular Dynamics SimulationPeptide Elongation FactorsEFL1 protein, humanEIF6 protein, humanEukaryotic Initiation FactorsPeptide Elongation FactorsProteinsRibonucleoprotein, U5 Small NuclearSBDS protein, human

Identifiers

PMID34413298
PMCPMC8377010
OpenAlexW3194071312

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.