Evidence map›Paper›PMID 34413189›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Genealogical structure changes as range expansions transition from pushed to pulled.

Gabriel Birzu, Oskar Hallatschek, Kirill S Korolev

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Gabriel BirzuDepartment of Physics, Boston University, Boston, MA 02215.ORCID 0000-0003-3561-024X
Oskar HallatschekDepartment of Physics, University of California, Berkeley, CA 94720.ORCID 0000-0002-1312-5975
Kirill S KorolevDepartment of Physics, Boston University, Boston, MA 02215; korolev@bu.edu.ORCID 0000-0003-1988-0645

Funding

Resolving the Mechano-Chemical Regulation of Microbial Populations in Microfluidic DevicesR01GM115851 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HALLATSCHEK, OSKAR · 2015 to 2023
$2.2M
Relationship between genealogies and biophysical processes during spatial growth.R01GM138530 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI KOROLEV, KIRILL SERGEEVICH · 2020 to 2024
$1.4M
NIGMS NIH HHS R01 GM115851NIGMS NIH HHS R01 GM138530
6 · The paper itself

Abstract

Range expansions accelerate evolution through multiple mechanisms, including gene surfing and genetic drift. The inference and control of these evolutionary processes ultimately rely on the information contained in genealogical trees. Currently, there are two opposing views on how range expansions shape genealogies. In invasion biology, expansions are typically approximated by a series of population bottlenecks producing genealogies with only pairwise mergers between lineages-a process known as the Kingman coalescent. Conversely, traveling wave models predict a coalescent with multiple mergers, known as the Bolthausen-Sznitman coalescent. Here, we unify these two approaches and show that expansions can generate an entire spectrum of coalescent topologies. Specifically, we show that tree topology is controlled by growth dynamics at the front and exhibits large differences between pulled and pushed expansions. These differences are explained by the fluctuations in the total number of descendants left by the early founders. High growth cooperativity leads to a narrow distribution of reproductive values and the Kingman coalescent. Conversely, low growth cooperativity results in a broad distribution, whose exponent controls the merger sizes in the genealogies. These broad distribution and non-Kingman tree topologies emerge due to the fluctuations in the front shape and position and do not occur in quasi-deterministic simulations. Overall, our results show that range expansions provide a robust mechanism for generating different types of multiple mergers, which could be similar to those observed in populations with strong selection or high fecundity. Thus, caution should be exercised in making inferences about the origin of non-Kingman genealogies.

Indexed as

EcosystemModels, GeneticPhylogenyAnimal DistributionAnimalsGenetic DriftGenetics, PopulationPedigreePopulation Dynamicscoalescentneutral genetic diversityoffspring distributionrange expansiontraveling wave

Identifiers

PMID34413189
PMCPMC8403960

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.