Evidence map›Paper›PMID 34412702›Full record

ArticleAntimicrobial resistance and infection control2021

Genomic analysis of Staphylococcus aureus from the West African Dwarf (WAD) goat in Nigeria.

Adebayo Osagie Shittu, Fadekemi Funmilayo Taiwo, Neele Judith Froböse, Bianca Schwartbeck, Silke Niemann, Alexander Mellmann, Frieder Schaumburg

Open access · goldAbstract read
In one paragraph

Article in Antimicrobial resistance and infection control, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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  9. Livestock, pets and humans as carriers of methicillin-resistantVeterinary research forum : an international quarterly journal · 2023
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  10. Microorganisms · 2022
    Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Adebayo Osagie ShittuDepartment of Microbiology, Obafemi Awolowo University, Ile-Ife, Nigeria. bayo_shittu@yahoo.com.ORCID 0000-0003-3992-4123
Fadekemi Funmilayo TaiwoDepartment of Microbiology, Obafemi Awolowo University, Ile-Ife, Nigeria.
Neele Judith FroböseInstitute of Medical Microbiology, University Hospital Münster, Domagkstraße 10, 48149, Münster, Germany.
Bianca SchwartbeckInstitute of Medical Microbiology, University Hospital Münster, Domagkstraße 10, 48149, Münster, Germany.
Silke NiemannInstitute of Medical Microbiology, University Hospital Münster, Domagkstraße 10, 48149, Münster, Germany.
Alexander MellmannInstitute of Medical Microbiology, University Hospital Münster, Domagkstraße 10, 48149, Münster, Germany.
Frieder SchaumburgInstitute of Medical Microbiology, University Hospital Münster, Domagkstraße 10, 48149, Münster, Germany.
University Hospital Münster · DEObafemi Awolowo University · NG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundStaphylococcus aureus can colonize various host species, and human-animal interaction is a significant factor for cross-species transmission. However, data on S. aureus colonization in animals, particularly on ruminants in close contact with humans, is limited. The West African Dwarf (WAD) goat is among the earliest domesticated ruminant associated with rural dwellers and small-holder farmers in sub-Saharan Africa. This study aimed to investigate the population structure, antibiotic resistance, and virulence gene determinants of S. aureus from the WAD goat in Nigeria.

methodsNasal samples were obtained from the WAD goat in five markets in Osun State, South-West Nigeria. S. aureus was characterized by antibiotic susceptibility testing, detection of virulence determinants, spa typing, and multilocus sequence typing (MLST). Representative isolates were selected for whole-genome sequencing, biofilm, and cytotoxicity assay.

resultsOf the 726 nasal samples obtained from the WAD goat, 90 S. aureus (12.4%) were recovered. Overall, 86 isolates were methicillin-susceptible, and four were mecA-positive (i.e., methicillin-resistant S. aureus [MRSA]). A diverse S. aureus clonal population was observed (20 sequence types [STs] and 37 spa types), while 35% (13/37) and 40% (8/20) were new spa types and STs, respectively. Eleven MLST clonal complexes (CC) were identified (CC1, CC5, CC8, CC15, CC30, CC45, CC97, CC121, CC133, CC152, CC522). The MRSA isolates were designated as t127-ST852-CC1-SCCmec type VII, t4690-ST152-CC152-SCCmec type Vc, and t8821-ST152-CC152-SCCmec type Vc. Phylogenetic analysis revealed that 60% (54/90) of all isolates were associated with ruminant lineages (i.e., CC133, CC522). Panton-Valentine Leukocidin (PVL)-positive S. aureus was identified in CC1, CC30, CC121, and CC152. For the CC522 isolates, we illustrate their pathogenic potential by the detection of the toxic shock syndrome gene and hemolysins, as well as their strong cytotoxicity and ability to form biofilms.

conclusionsThis is the first detailed investigation on the genomic content of S. aureus from the WAD goat in Nigeria. The S. aureus population of the WAD goat consists mainly of ruminant-associated lineages (e.g., CC133, CC522), interspersed with human-associated clones, including PVL-positive MRSA CC1 and CC152.

Indexed as

Genome, BacterialAnimalsGoatsMethicillin-Resistant Staphylococcus aureusMultilocus Sequence TypingNigeriaPhylogenyStaphylococcal InfectionsStaphylococcus aureusVirulenceGoatsNigeriaRuminantsStaphylococcus aureusWhole-genome sequencing

Identifiers

PMID34412702
PMCPMC8375196
OpenAlexW3195384842

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.