Evidence map›Paper›PMID 34410389›Full record

ArticleGenome biology and evolution2021

Whole-Genome Sequencing of a 900-Year-Old Human Skeleton Supports Two Past Migration Events from the Russian Far East to Northern Japan.

Takehiro Sato, Noboru Adachi, Ryosuke Kimura, Kazuyoshi Hosomichi, Minoru Yoneda, Hiroki Oota, Atsushi Tajima, Atsushi Toyoda, Hideaki Kanzawa-Kiriyama, Hiromi Matsumae and 7 more

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 10 institutions in 5 countries.

Takehiro SatoDepartment of Human Biology and Anatomy, Graduate School of Medicine, University of the Ryukyus, Nishihara, Japan.ORCID 0000-0001-9866-0346
Noboru AdachiDepartment of Legal Medicine, Graduate School of Medicine, University of Yamanashi, Chuo, Japan.
Ryosuke KimuraDepartment of Human Biology and Anatomy, Graduate School of Medicine, University of the Ryukyus, Nishihara, Japan.ORCID 0000-0003-0100-273X
Kazuyoshi HosomichiDepartment of Bioinformatics and Genomics, Graduate School of Medical Sciences, Kanazawa University, Kanazawa, Japan.
Minoru YonedaThe University Museum, The University of Tokyo, Tokyo, Japan.
Hiroki OotaDepartment of Anatomy, Kitasato University School of Medicine, Sagamihara, Japan.ORCID 0000-0003-0746-2729
Atsushi TajimaDepartment of Bioinformatics and Genomics, Graduate School of Medical Sciences, Kanazawa University, Kanazawa, Japan.ORCID 0000-0001-6808-5491
Atsushi ToyodaComparative Genomics Laboratory, National Institute of Genetics, Mishima, Japan.
Hideaki Kanzawa-KiriyamaDepartment of Anthropology, National Museum of Nature and Science, Tsukuba, Japan.
Hiromi MatsumaeKihara Institute for Biological Research (KIBR), Yokohama City University, Yokohama, Japan.
Kae KoganebuchiDepartment of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan.ORCID 0000-0002-6972-2218
Kentaro K ShimizuKihara Institute for Biological Research (KIBR), Yokohama City University, Yokohama, Japan.ORCID 0000-0002-6483-1781
Ken-Ichi ShinodaDepartment of Anthropology, National Museum of Nature and Science, Tsukuba, Japan.
Tsunehiko HaniharaDepartment of Anatomy, Kitasato University School of Medicine, Sagamihara, Japan.
Andrzej WeberDepartment of Anthropology, University of Alberta, Edmonton, Alberta, Canada.
Hirofumi KatoCentre for Ainu and Indigenous Studies, Hokkaido University, Sapporo, Japan.
Hajime IshidaDepartment of Human Biology and Anatomy, Graduate School of Medicine, University of the Ryukyus, Nishihara, Japan.
Kanazawa University · JPUniversity of the Ryukyus · JPKihara Institute for Biological Research · JPKitasato University · JPNational Museum of Nature and Science · JPHokkaido University · JPNational Institute of Genetics · JPThe University of Tokyo · JPUniversity of Alberta · CAUniversity of Yamanashi · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recent studies on paleogenomics have reported some Paleolithic and Neolithic genomes that have provided new insights into the human population history in East and Northeast Asia. However, there remain some cases where more recent migration events need to be examined to elucidate the detailed formation process of local populations. Although the area around northern Japan is one of the regions archaeologically suggested to have been affected by migration waves after the Neolithic period, the genetic source of these migrations are still unclear. Thus, genomic data from such past migrant populations would be highly informative to clarify the detailed formation process of local populations in this region. Here, we report the genome sequence of a 900-year-old adult female (NAT002) belonging to the prehistoric Okhotsk people, who have been considered to be the past migrants to northern Japan after the Neolithic period. We found a close relationship between NAT002 and modern Lower Amur populations and past admixture events between the Amur, Jomon, and Kamchatka ancestries. The admixture dating suggested migration of Amur-related ancestry at approximately 1,600 BP, which is compatible with the archaeological evidence regarding the settlement of the Okhotsk people. Our results also imply migration of Kamchatka-related ancestry at approximately 2,000 BP. In addition, human leukocyte antigen (HLA) typing detected the HLA-B*40 allele, which is reported to increase the risk of arthritis, suggesting the genetic vulnerability of NAT002 to hyperostosis, which was observed around her chest clavicle.

Indexed as

Genome, HumanGenomicsAsia, EasternFemaleHuman MigrationHumansJapanPaleontologySkeletonadmixture datingancient genomicsnext-generation sequencingpopulation historyprehistoric Okhotsk people

Identifiers

PMID34410389
PMCPMC8449830
OpenAlexW3194887529

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.