Evidence map›Paper›PMID 34409984›Full record

ArticleThe Biochemical journal2021

Structure and function of aerotolerant, multiple-turnover THI4 thiazole synthases.

Jaya Joshi, Qiang Li, Jorge D García-García, Bryan J Leong, You Hu, Steven D Bruner, Andrew D Hanson

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. In vivo hypermutation and continuous evolution.Nature reviews. Methods primers · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jaya Joshi *Department of Horticultural Sciences, University of Florida, Gainesville, FL, U.S.A.
Qiang Li *Department of Chemistry, University of Florida, Gainesville, FL, U.S.A.
Jorge D García-GarcíaDepartment of Horticultural Sciences, University of Florida, Gainesville, FL, U.S.A.
Bryan J LeongDepartment of Horticultural Sciences, University of Florida, Gainesville, FL, U.S.A.
You HuDepartment of Chemistry, University of Florida, Gainesville, FL, U.S.A.
Steven D BrunerDepartment of Chemistry, University of Florida, Gainesville, FL, U.S.A.
Andrew D HansonDepartment of Horticultural Sciences, University of Florida, Gainesville, FL, U.S.A.ORCID 0000-0003-2585-9340
University of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant and fungal THI4 thiazole synthases produce the thiamin thiazole moiety in aerobic conditions via a single-turnover suicide reaction that uses an active-site Cys residue as sulfur donor. Multiple-turnover (i.e. catalytic) THI4s lacking an active-site Cys (non-Cys THI4s) that use sulfide as sulfur donor have been biochemically characterized -- but only from archaeal methanogens that are anaerobic, O2-sensitive hyperthermophiles from sulfide-rich habitats. These THI4s prefer iron as cofactor. A survey of prokaryote genomes uncovered non-Cys THI4s in aerobic mesophiles from sulfide-poor habitats, suggesting that multiple-turnover THI4 operation is possible in aerobic, mild, low-sulfide conditions. This was confirmed by testing 23 representative non-Cys THI4s for complementation of an Escherichia coli ΔthiG thiazole auxotroph in aerobic conditions. Sixteen were clearly active, and more so when intracellular sulfide level was raised by supplying Cys, demonstrating catalytic function in the presence of O2 at mild temperatures and indicating use of sulfide or a sulfide metabolite as sulfur donor. Comparative genomic evidence linked non-Cys THI4s with proteins from families that bind, transport, or metabolize cobalt or other heavy metals. The crystal structure of the aerotolerant bacterial Thermovibrio ammonificans THI4 was determined to probe the molecular basis of aerotolerance. The structure suggested no large deviations compared with the structures of THI4s from O2-sensitive methanogens, but is consistent with an alternative catalytic metal. Together with complementation data, use of cobalt rather than iron was supported. We conclude that catalytic THI4s can indeed operate aerobically and that the metal cofactor inserted is a likely natural determinant of aerotolerance.

Indexed as

ArchaeaArchaeal ProteinsBacteriaBiocatalysisCatalytic DomainCobaltCrystallizationCysteineEscherichia coliEscherichia coli ProteinsGenomicsIronMicroorganisms, Genetically-ModifiedOxygenSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsArchaeal ProteinsCobaltCysteineEscherichia coli ProteinsIronOxygenSaccharomyces cerevisiae ProteinsSulfidesSulfurTHI4 protein, S cerevisiaeThiamineThiG protein, E colicomparative genomicssuicide enzymethiaminthiazole biosynthesis

Identifiers

PMID34409984
PMCPMC8454699
OpenAlexW3193476920

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.