Evidence map›Paper›PMID 34408850›Full record

SynthesisF1000Research2021

Data extraction methods for systematic review (semi)automation: Update of a living systematic review.

Lena Schmidt, Ailbhe N Finnerty Mutlu, Rebecca Elmore, Babatunde K Olorisade, James Thomas, Julian P T Higgins

Abstract readSystematic Review
In one paragraph

Synthesis in F1000Research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 4 syntheses or guidelines pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lena SchmidtNIHR Innovation Observatory, Newcastle University, Newcastle upon Tyne, NE4 5TG, UK.ORCID 0000-0003-0709-8226
Ailbhe N Finnerty MutluUCL Social Research Institute, University College London, London, WC1H 0AL, UK.
Rebecca ElmoreSciome LLC, Research Triangle Park, North Carolina, 27713, USA.ORCID 0000-0003-1161-2064
Babatunde K OlorisadeBristol Medical School, University of Bristol, Bristol, BS8 2PS, UK.
James ThomasUCL Social Research Institute, University College London, London, WC1H 0AL, UK.ORCID 0000-0003-4805-4190
Julian P T HigginsBristol Medical School, University of Bristol, Bristol, BS8 2PS, UK.

Funding

Medical Research Council MR/K025643/1
6 · The paper itself

Abstract

Background: The reliable and usable (semi) automation of data extraction can support the field of systematic review by reducing the workload required to gather information about the conduct and results of the included studies. This living systematic review examines published approaches for data extraction from reports of clinical studies. Methods: We systematically and continually search PubMed, ACL Anthology, arXiv, OpenAlex via EPPI-Reviewer, and the Results: 117 publications are included in this review. Of these, 30 (26%) used full texts while the rest used titles and abstracts. A total of 112 (96%) publications developed classifiers for randomised controlled trials. Over 30 entities were extracted, with PICOs (population, intervention, comparator, outcome) being the most frequently extracted. Data are available from 53 (45%), and code from 49 (42%) publications. Nine (8%) implemented publicly available tools. Conclusions: This living systematic review presents an overview of (semi)automated data-extraction literature of interest to different types of literature review. We identified a broad evidence base of publications describing data extraction for interventional reviews and a small number of publications extracting other study types. Between review updates, large language models emerged as a new tool for data extraction. While facilitating access to automated extraction, they showed a trend of decreasing quality of results reporting, especially quantitative results such as recall and lower reproducibility of results. Compared with the previous update, trends such as transition to relation extraction and sharing of code and datasets stayed similar.

Indexed as

Information Storage and RetrievalSystematic Reviews as TopicAutomationHumansData ExtractionNatural Language ProcessingReproducibilitySystematic ReviewsText Mining

Identifiers

PMID34408850
PMCPMC8361807

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.