Evidence map›Paper›PMID 34408627›Full record

ArticleFrontiers in cellular neuroscience2021

Passive Clearing and 3D Lightsheet Imaging of the Intact and Injured Spinal Cord in Mice.

Dylan A McCreedy, Frank L Jalufka, Madison E Platt, Sun Won Min, Megan A Kirchhoff, Anna L Pritchard, Shelby K Reid, Ronald Manlapaz, Eszter Mihaly, Jessica C Butts and 4 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular neuroscience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
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  8. V2a neurons restore diaphragm function in mice following spinal cord injury.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Dylan A McCreedyDepartment of Biology, Texas A&M University, College Station, TX, United States.
Frank L JalufkaDepartment of Biology, Texas A&M University, College Station, TX, United States.
Madison E PlattDepartment of Biology, Texas A&M University, College Station, TX, United States.
Sun Won MinDepartment of Biology, Texas A&M University, College Station, TX, United States.
Megan A KirchhoffDepartment of Biology, Texas A&M University, College Station, TX, United States.
Anna L PritchardDepartment of Biomedical Engineering, Texas A&M University, College Station, TX, United States.
Shelby K ReidTexas A&M Institute for Neuroscience, College Station, TX, United States.
Ronald ManlapazGladstone Institutes, San Francisco, CA, United States.
Eszter MihalyGladstone Institutes, San Francisco, CA, United States.
Jessica C ButtsGladstone Institutes, San Francisco, CA, United States.
Nisha R IyerWisconsin Institute for Discovery, University of Wisconsin-Madison, Madison, WI, United States.
Shelly E Sakiyama-ElbertDepartment of Biomedical Engineering, University of Texas at Austin, Austin, TX, United States.
Steven A CroneDivision of Neurosurgery, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, United States.
Todd C McDevittGladstone Institutes, San Francisco, CA, United States.
Texas A&M University · USGladstone Institutes · USThe University of Texas at Austin · USUniversity of California, San Francisco · USUniversity of Cincinnati Medical Center · USUniversity of Wisconsin–Madison · US

Funding

DEVELOPING NEW TOOLS TO UNDERSTAND THE ROLE OF INTERNEURONS IN REWIRING AFTER SPINAL CORD INJURY.R01NS090617 · NINDS · WASHINGTON UNIVERSITY · PI SAKIYAMA-ELBERT, SHELLY ELESE · 2015 to 2019
$1.6M
The role of L-selectin in leukocyte recruitment and longer term recovery after spinal cord injuryF32NS096883 · NINDS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MCCREEDY, DYLAN A. · 2016 to 2018
$174k
NINDS NIH HHS F32 NS096883NINDS NIH HHS R01 NS090617
6 · The paper itself

Abstract

The spinal cord contains a diverse array of sensory and motor circuits that are essential for normal function. Spinal cord injury (SCI) permanently disrupts neural circuits through initial mechanical damage, as well as a cascade of secondary injury events that further expand the spinal cord lesion, resulting in permanent paralysis. Tissue clearing and 3D imaging have recently emerged as promising techniques to improve our understanding of the complex neural circuitry of the spinal cord and the changes that result from damage due to SCI. However, the application of this technology for studying the intact and injured spinal cord remains limited. Here, we optimized the passive CLARITY technique (PACT) to obtain gentle and efficient clearing of the murine spinal cord without the need for specialized equipment. We demonstrate that PACT clearing enables 3D imaging of multiple fluorescent labels in the spinal cord to assess molecularly defined neuronal populations, acute inflammation, long-term tissue damage, and cell transplantation. Collectively, these procedures provide a framework for expanding the utility of tissue clearing to enhance the study of spinal cord neural circuits, as well as cellular- and tissue-level changes that occur following SCI.

Indexed as

lightsheet imagingneural circuitsPACTspinal cord injurytissue clearing

Identifiers

PMID34408627
PMCPMC8366232
OpenAlexW3189501268

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.