Evidence map›Paper›PMID 34407442›Full record

ArticleMolecular cell2021

Structural and mechanistic basis for protein glutamylation by the kinase fold.

Adam Osinski, Miles H Black, Krzysztof Pawłowski, Zhe Chen, Yang Li, Vincent S Tagliabracci

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. TIR-like NADases act in bacterial immunity and the RNA vault.bioRxiv : the preprint server for biology · 2026
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  4. Review
  5. Journal of bacteriology · 2024
    Review
  6. Review
  7. Article
  8. Article
  9. Science advances · 2024
    Article
  10. Article
  11. Review
  12. Emerging functions of pseudoenzymes.The Biochemical journal · 2023
    Review
  13. Article
  14. Review
  15. Review
  16. Classification of domains in predicted structures of the human proteome.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Review
  18. Review
  19. A Bifunctional Enzyme ofJournal of translational internal medicine · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Adam OsinskiDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Miles H BlackDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Krzysztof PawłowskiDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Institute of Biology, Warsaw University of Life Sciences, Warsaw 02-787, Poland.
Zhe ChenDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA.
Yang LiDepartment of Biophysics, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA. Electronic address: yang2.li@utsouthwestern.edu.
Vincent S TagliabracciDepartment of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Harold C. Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA; Hamon Center for Regenerative Science and Medicine, University of Texas Southwestern Medical Center, Dallas, TX 75390, USA. Electronic address: vincent.tagliabracci@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USSouthwestern Medical Center · USWarsaw University of Life Sciences · PL

Funding

Pacific Northwest Center for Cryo-EM - Screening supplementU24GM129547 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI EVANS, JAMES E, GOUAUX, JAMES E · 2018 to 2023
$54.8M
Breathing life into dead enzymesDP2GM137419 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI TAGLIABRACCI, VINCENT SCOTT · 2019 to 2020
$2.6M
Lipoprotein Phosphorylation by Secretory Pathway KinasesF30HL143859 · NHLBI · UT SOUTHWESTERN MEDICAL CENTER · PI BLACK, MILES HENRY · 2018 to 2021
$102k
NHLBI NIH HHS F30 HL143859NIGMS NIH HHS DP2 GM137419NIGMS NIH HHS U24 GM129547
6 · The paper itself

Abstract

The kinase domain transfers phosphate from ATP to substrates. However, the Legionella effector SidJ adopts a kinase fold, yet catalyzes calmodulin (CaM)-dependent glutamylation to inactivate the SidE ubiquitin ligases. The structural and mechanistic basis in which the kinase domain catalyzes protein glutamylation is unknown. Here we present cryo-EM reconstructions of SidJ:CaM:SidE reaction intermediate complexes. We show that the kinase-like active site of SidJ adenylates an active-site Glu in SidE, resulting in the formation of a stable reaction intermediate complex. An insertion in the catalytic loop of the kinase domain positions the donor Glu near the acyl-adenylate for peptide bond formation. Our structural analysis led us to discover that the SidJ paralog SdjA is a glutamylase that differentially regulates the SidE ligases during Legionella infection. Our results uncover the structural and mechanistic basis in which the kinase fold catalyzes non-ribosomal amino acid ligations and reveal an unappreciated level of SidE-family regulation.

Indexed as

Protein FoldingBacterial ProteinsCalmodulinCatalysisCatalytic DomainCryoelectron MicroscopyLegionellaMutagenesisPeptidesProtein BindingProtein ConformationProtein DomainsProteinsSpectrometry, FluorescenceUbiquitin-Protein LigasesVirulence FactorsBacterial ProteinsCalmodulinPeptidesProteinsSidJ protein, Legionella pneumophilaUbiquitin-Protein LigasesVirulence FactorseffectorsglutamylationLegionellapseudokinaseSdeASdeBSdeCSdjASidESidJ

Identifiers

PMID34407442
PMCPMC8571041
OpenAlexW3194834343

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.