Evidence map›Paper›PMID 34407185›Full record

ArticleDisease models & mechanisms2021

The MEMIC is an ex vivo system to model the complexity of the tumor microenvironment.

Libuše Janská, Libi Anandi, Nell C Kirchberger, Zoran S Marinkovic, Logan T Schachtner, Gizem Guzelsoy, Carlos Carmona-Fontaine

Abstract read
In one paragraph

Article in Disease models & mechanisms, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

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  8. Sharing resources to advance translational research.Disease models & mechanisms · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Libuše JanskáCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.
Libi AnandiCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.
Nell C KirchbergerCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.
Zoran S MarinkovicCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.ORCID 0000-0002-7720-2802
Logan T SchachtnerCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.
Gizem GuzelsoyCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.
Carlos Carmona-FontaineCenter for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.ORCID 0000-0002-5238-6852

Funding

Decoding the fundamental mechanisms of tumor emergence and evolutionDP2CA250005 · NCI · NEW YORK UNIVERSITY · PI CARMONA-FONTAINE, CARLOS · 2019 to 2019
$2.4M
Using extracellular metabolites to understand and revert protumoral effects of Tumor-Associated MacrophagesR00CA191021 · NCI · NEW YORK UNIVERSITY · PI CARMONA-FONTAINE, CARLOS · 2017 to 2019
$747k
NCI NIH HHS DP2 CA250005NCI NIH HHS R00 CA191021
6 · The paper itself

Abstract

There is an urgent need for accurate, scalable and cost-efficient models of the tumor microenvironment. Here, we detail how to fabricate and use the metabolic microenvironment chamber (MEMIC) - a 3D-printed ex vivo model of intratumoral heterogeneity. A major driver of the cellular and molecular diversity in tumors is accessibility to the blood stream. Whereas perivascular tumor cells have direct access to oxygen and nutrients, cells further from the vasculature must survive under progressively more ischemic environments. The MEMIC simulates this differential access to nutrients, allow co-culturing any number of cell types, and it is optimized for live imaging and other microscopy-based analyses. Owing to a modular design and full experimental control, the MEMIC provides insights into the tumor microenvironment that would be difficult to obtain via other methods. As proof of principle, we show that cells sense gradual changes in metabolite concentration leading to predictable molecular and cellular spatial patterns. We propose the MEMIC as a complement to standard in vitro and in vivo experiments, diversifying the tools available to accurately model, perturb and monitor the tumor microenvironment.

Indexed as

NeoplasmsTumor MicroenvironmentCoculture TechniquesHumansTissue mimeticsTumor metabolismTumor microenvironment

Identifiers

PMID34407185
PMCPMC8382743

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.