Evidence map›Paper›PMID 34406852›Full record

ArticlemSphere2021

Proteorhodopsin Phototrophy in Antarctic Coastal Waters.

Jerónimo Cifuentes-Anticevic, María E Alcamán-Arias, Tomás Alarcón-Schumacher, Javier Tamayo-Leiva, Carlos Pedrós-Alió, Laura Farías, Beatriz Díez

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.3field-weighted citation impact, top 50% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Widespread use of proton-pumping rhodopsin in Antarctic phytoplankton.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 4 countries.

Jerónimo Cifuentes-AnticevicDepartment of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chilegrid.7870.8, Santiago, Chile.
María E Alcamán-AriasDepartment of Oceanography, Universidad de Concepción, Concepción, Chile.
Tomás Alarcón-SchumacherDepartment of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chilegrid.7870.8, Santiago, Chile.
Javier Tamayo-LeivaDepartment of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chilegrid.7870.8, Santiago, Chile.
Carlos Pedrós-AlióDepartamento de Biología de Sistemas, Centro Nacional de Biotecnología (CSIC), Madrid, Spain.
Laura FaríasDepartment of Oceanography, Universidad de Concepción, Concepción, Chile.
Beatriz DíezDepartment of Molecular Genetics and Microbiology, Pontificia Universidad Católica de Chilegrid.7870.8, Santiago, Chile.
Pontificia Universidad Católica de Chile · CLUniversity of Concepción · CLCentro Nacional de Biotecnología · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Microbial proton-pumping rhodopsins are considered the simplest strategy among phototrophs to conserve energy from light. Proteorhodopsins are the most studied rhodopsins thus far because of their ubiquitous presence in the ocean, except in Antarctica, where they remain understudied. We analyzed proteorhodopsin abundance and transcriptional activity in the Western Antarctic coastal seawaters. Combining quantitative PCR (qPCR) and metagenomics, the relative abundance of proteorhodopsin-bearing bacteria accounted on average for 17, 3.5, and 29.7% of the bacterial community in Chile Bay (South Shetland Islands) during 2014, 2016, and 2017 summer-autumn, respectively. The abundance of proteorhodopsin-bearing bacteria changed in relation to environmental conditions such as chlorophyll

Indexed as

Phototrophic ProcessesAlphaproteobacteriaAntarctic RegionsEcosystemFlavobacteriaceaeMetagenomicsMicrobiotaPhylogenyRhodopsinRhodopsins, MicrobialSeawaterproteorhodopsinRhodopsinRhodopsins, MicrobialAntarcticamarine microbiologymetagenomicsmetatranscriptomesphotoheterotrophyproteorhodopsinsunlight

Identifiers

PMID34406852
PMCPMC8386455
OpenAlexW3195945262

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.