Evidence map›Paper›PMID 34406797›Full record

ArticleJournal of clinical microbiology2021

Genome Typing and Epidemiology of Human Listeriosis in New Zealand, 1999 to 2018.

Lucia Rivas, Shevaun Paine, Pierre-Yves Dupont, Audrey Tiong, Beverley Horn, Alexandra Moura, Brent J Gilpin

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Clinical and Bacterial Characteristics of Bloodstream Infections Caused byThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2024
    Article
  4. Article
  5. Article
  6. Emergence and global spread ofScience advances · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Lucia RivasInstitute of Environmental Science and Researchgrid.419706.d Limited, Christchurch Science Centre, Ilam, Christchurch, New Zealand.ORCID 0000-0001-9666-495X
Shevaun PaineInstitute of Environmental Science and Researchgrid.419706.d Limited, Kenepuru Science Centre, Porirua, Wellington, New Zealand.
Pierre-Yves DupontInstitute of Environmental Science and Researchgrid.419706.d Limited, Christchurch Science Centre, Ilam, Christchurch, New Zealand.
Audrey TiongInstitute of Environmental Science and Researchgrid.419706.d Limited, Kenepuru Science Centre, Porirua, Wellington, New Zealand.
Beverley HornInstitute of Environmental Science and Researchgrid.419706.d Limited, Christchurch Science Centre, Ilam, Christchurch, New Zealand.
Alexandra MouraInstitut Pasteur, Biology of Infection Unit, INSERM U1117, French National Reference Centre and WHO Collaborating Centre Listeria, Paris, France.
Brent J GilpinInstitute of Environmental Science and Researchgrid.419706.d Limited, Christchurch Science Centre, Ilam, Christchurch, New Zealand.
New Zealand Institute for Public Health and Forensic Science · NZInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study describes the epidemiology of listeriosis in New Zealand between 1999 and 2018 as well as the retrospective whole-genome sequencing (WGS) of 453 Listeria monocytogenes isolates corresponding to 95% of the human cases within this period. The average notified rate of listeriosis was 0.5 cases per 100,000 population, and non-pregnancy-associated cases were more prevalent than pregnancy-associated cases (averages of 19 and 5 cases per annum, respectively). WGS data was assessed using multilocus sequencing typing (MLST), including core-genome and whole-genome MLST (cgMLST and wgMLST, respectively) and single-nucleotide polymorphism (SNP) analysis. Thirty-nine sequence types (STs) were identified, with the most common being ST1 (21.9%), ST4 (13.2%), ST2 (11.3%), ST120 (6.1%), and ST155 (6.4%). A total of 291 different cgMLST types were identified, with the majority (

Indexed as

Listeria monocytogenesListeriosisDisease OutbreaksFood MicrobiologyGenome, BacterialHumansMultilocus Sequence TypingNew ZealandProspective StudiesRetrospective StudiesclinicalgenotypingListeriaListeria monocytogeneslisteriosiswhole-genome sequencing

Identifiers

PMID34406797
PMCPMC8525582
OpenAlexW3194272412

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.