Evidence map›Paper›PMID 34405283›Full record

ReviewFunctional & integrative genomics2021

RNA-Seq-based DNA marker analysis of the genetics and molecular evolution of Triticeae species.

Kazuhiro Sato, Kentaro Yoshida, Shigeo Takumi

Abstract readReview
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In one paragraph

Review in Functional & integrative genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Development of a genome-wide marker design workflow for onions and its application in target amplicon sequencing-based genotyping.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kazuhiro SatoInstitute of Plant Science and Resources, Okayama University, Okayama, 710-0046, Kurashiki, Japan. kazsato@okayama-u.ac.jp.ORCID http://orcid.org/0000-0001-8818-5203
Kentaro YoshidaGraduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe, Hyogo, 657-8501, Japan.ORCID http://orcid.org/0000-0002-3614-1759
Shigeo TakumiGraduate School of Agricultural Science, Kobe University, Rokkodai 1-1, Nada, Kobe, Hyogo, 657-8501, Japan.ORCID http://orcid.org/0000-0001-5257-6982

Funding

Japan Society for the Promotion of Science 16H04862Japan Society for the Promotion of Science 19H04863Precursory Research for Embryonic Science and Technology JPMJPR15QB
6 · The paper itself

Abstract

The release of high-quality chromosome-level genome sequences of members of the Triticeae tribe has greatly facilitated genetic and genomic analyses of important crops such as wheat (Triticum aestivum) and barley (Hordeum vulgare). Due to the large diploid genome size of Triticeae plants (ca. 5 Gbp), transcript analysis is an important method for identifying genetic and genomic differences among Triticeae species. In this review, we summarize our results of RNA-Seq analyses of diploid wheat accessions belonging to the genera Aegilops and Triticum. We also describe studies of the molecular relationships among these accessions and provide insight into the evolution of common hexaploid wheat. DNA markers based on polymorphisms within species can be used to map loci of interest. Even though the genome sequence of diploid Aegilops tauschii, the D-genome donor of common wheat, has been released, the diploid barley genome continues to provide key information about the physical structures of diploid wheat genomes. We describe how a series of RNA-Seq analyses of wheat relatives has helped uncover the structural and evolutionary features of genomic and genetic systems in wild and cultivated Triticeae species.

Indexed as

Evolution, MolecularGenetic MarkersGenome, PlantRNA-SeqHordeumTriticumGenetic MarkersAegilopsDNA markerHordeumRNA-SeqTriticeaeTriticum

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.