Evidence map›Paper›PMID 34404787›Full record

ArticleNature communications2021

Measuring expression heterogeneity of single-cell cytoskeletal protein complexes.

Julea Vlassakis, Louise L Hansen, Ryo Higuchi-Sanabria, Yun Zhou, C Kimberly Tsui, Andrew Dillin, Haiyan Huang, Amy E Herr

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Single-Cell Protein Assays in Context: From 2D to 3D and In Situ Analysis.Annual review of analytical chemistry (Palo Alto, Calif.) · 2026
    Review
  3. Article
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Julea Vlassakis *Department of Bioengineering, University of California Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-5456-6366
Louise L Hansen *Department of Bioengineering, University of California Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0001-8043-2660
Ryo Higuchi-SanabriaDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.
Yun ZhouDivision of Biostatistics, University of California Berkeley, Berkeley, CA, USA.
C Kimberly TsuiDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-3807-5329
Andrew DillinDepartment of Molecular and Cell Biology, University of California Berkeley, Berkeley, CA, USA.
Haiyan HuangDepartment of Statistics, University of California Berkeley, Berkeley, CA, USA.
Amy E HerrDepartment of Bioengineering, University of California Berkeley, Berkeley, CA, USA. aeh@berkeley.edu.ORCID http://orcid.org/0000-0002-6906-2985
University of California, Berkeley · USHoward Hughes Medical Institute · US

Funding

MULTIPLEXED ISOFORM QUANTIFICATION IN HER2-POSITIVE BREAST CANCERR01CA203018 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI HERR, AMY ELIZABETH · 2016 to 2024
$2.8M
The Collapse of Proteostasis during Aging is Mediated by Cytoskeletal Actin FunctionsR01AG055891 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI DILLIN, ANDREW G · 2017 to 2021
$1.6M
More than just a load control: cytoskeletal form and function during agingK99AG065200 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI HIGUCHI-SANABRIA, RYO · 2020 to 2021
$244k
Howard Hughes Medical InstituteNCI NIH HHS R01 CA203018NIA NIH HHS K99 AG065200NIA NIH HHS R01 AG055891
6 · The paper itself

Abstract

Multimeric cytoskeletal protein complexes orchestrate normal cellular function. However, protein-complex distributions in stressed, heterogeneous cell populations remain unknown. Cell staining and proximity-based methods have limited selectivity and/or sensitivity for endogenous multimeric protein-complex quantification from single cells. We introduce micro-arrayed, differential detergent fractionation to simultaneously detect protein complexes in hundreds of individual cells. Fractionation occurs by 60 s size-exclusion electrophoresis with protein complex-stabilizing buffer that minimizes depolymerization. Proteins are measured with a ~5-hour immunoassay. Co-detection of cytoskeletal protein complexes in U2OS cells treated with filamentous actin (F-actin) destabilizing Latrunculin A detects a unique subpopulation (~2%) exhibiting downregulated F-actin, but upregulated microtubules. Thus, some cells may upregulate other cytoskeletal complexes to counteract the stress of Latrunculin A treatment. We also sought to understand the effect of non-chemical stress on cellular heterogeneity of F-actin. We find heat shock may dysregulate filamentous and globular actin correlation. In this work, our assay overcomes selectivity limitations to biochemically quantify single-cell protein complexes perturbed with diverse stimuli.

Indexed as

Genetic HeterogeneityActinsAnimalsBridged Bicyclo Compounds, HeterocyclicCell DifferentiationCell LineCytoskeletal ProteinsCytoskeletonHeat-Shock ResponseHumansMicrotubulesModels, BiologicalSingle-Cell AnalysisThiazolidinesActinsBridged Bicyclo Compounds, HeterocyclicCytoskeletal Proteinslatrunculin AThiazolidines

Identifiers

PMID34404787
PMCPMC8371148
OpenAlexW3194320991

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.