Evidence map›Paper›PMID 34403472›Full record

ArticleNucleic acids research2021

Insights into the structure and RNA-binding specificity of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3).

Kuohan Li, Jie Zheng, Melissa Wirawan, Nguyen Mai Trinh, Olga Fedorova, Patrick R Griffin, Anna M Pyle, Dahai Luo

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. bioRxiv : the preprint server for biology · 2024
    Article
  4. CreatingRSC advances · 2022
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Kuohan LiLee Kong Chian School of Medicine, Nanyang Technological University, EMB 03-07, 59 Nanyang Drive 636921, Singapore.
Jie ZhengThe Scripps Research Institute, Jupiter, FL 33458, USA.
Melissa WirawanLee Kong Chian School of Medicine, Nanyang Technological University, EMB 03-07, 59 Nanyang Drive 636921, Singapore.
Nguyen Mai TrinhLee Kong Chian School of Medicine, Nanyang Technological University, EMB 03-07, 59 Nanyang Drive 636921, Singapore.
Olga FedorovaDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA.
Patrick R GriffinThe Scripps Research Institute, Jupiter, FL 33458, USA.
Anna M PyleDepartment of Molecular, Cellular and Developmental Biology, Yale University, New Haven, CT 06520, USA.ORCID 0000-0001-9045-8872
Dahai LuoLee Kong Chian School of Medicine, Nanyang Technological University, EMB 03-07, 59 Nanyang Drive 636921, Singapore.ORCID 0000-0001-7637-7275
Nanyang Technological University · SGHoward Hughes Medical Institute · USScripps Research Institute · US

Funding

Howard Hughes Medical Institute
6 · The paper itself

Abstract

DRH-3 is critically involved in germline development and RNA interference (RNAi) facilitated chromosome segregation via the 22G-siRNA pathway in Caenorhabditis elegans. DRH-3 has similar domain architecture to RIG-I-like receptors (RLRs) and belongs to the RIG-I-like RNA helicase family. The molecular understanding of DRH-3 and its function in endogenous RNAi pathways remains elusive. In this study, we solved the crystal structures of the DRH-3 N-terminal domain (NTD) and the C-terminal domains (CTDs) in complex with 5'-triphosphorylated RNAs. The NTD of DRH-3 adopts a distinct fold of tandem caspase activation and recruitment domains (CARDs) structurally similar to the CARDs of RIG-I and MDA5, suggesting a signaling function in the endogenous RNAi biogenesis. The CTD preferentially recognizes 5'-triphosphorylated double-stranded RNAs bearing the typical features of secondary siRNA transcripts. The full-length DRH-3 displays unique structural dynamics upon binding to RNA duplexes that differ from RIG-I or MDA5. These features of DRH-3 showcase the evolutionary divergence of the Dicer and RLR family of helicases.

Indexed as

Amino Acid SequenceAnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCrystallography, X-RayDEAD Box Protein 58DEAD-box RNA HelicasesInterferon-Induced Helicase, IFIH1Protein DomainsRNA-Binding ProteinsRNA, Double-StrandedRNA InterferenceCaenorhabditis elegans ProteinsDEAD Box Protein 58DEAD-box RNA HelicasesDrh-3 protein, C elegansInterferon-Induced Helicase, IFIH1RNA-Binding ProteinsRNA, Double-Stranded

Identifiers

PMID34403472
PMCPMC8464030
OpenAlexW3195635508

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.