Evidence map›Paper›PMID 34403464›Full record

ArticleLaboratory medicine2022

Mass Spectrometry-Based Detection of Beta Lactam Hydrolysis Enables Rapid Detection of Beta Lactamase Mediated Antibiotic Resistance.

Raymond T Suhandynata, Kyle Lund, Andrés M Caraballo-Rodríguez, Sharon L Reed, Pieter C Dorrestein, Robert L Fitzgerald, Nicholas J Bevins

Open access · greenAbstract read
In one paragraph

Article in Laboratory medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact, top 94% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Raymond T SuhandynataDepartment of Pathology, UC San Diego Health, San Diego, California, US.
Kyle LundDepartment of Pathology, UC San Diego Health, San Diego, California, US.
Andrés M Caraballo-RodríguezCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California, US.
Sharon L ReedDepartment of Pathology, UC San Diego Health, San Diego, California, US.
Pieter C DorresteinCollaborative Mass Spectrometry Innovation Center, Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California, San Diego, La Jolla, California, US.
Robert L FitzgeraldDepartment of Pathology, UC San Diego Health, San Diego, California, US.
Nicholas J BevinsDepartment of Pathology, UC San Diego Health, San Diego, California, US.ORCID 0000-0002-8073-5941
UC San Diego Health System · USUniversity of California San Diego · US

Funding

TrainingP41GM103484 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PEVZNER, PAVEL A · 2012 to 2018
$8.7M
Unified Computation Tools for Natural Products ResearchR01GM107550 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI COTTRELL, GARRISON W, GERWICK, WILLIAM HENRY · 2013 to 2025
$8.2M
Discovering novel small molecule antibiotics from complex microbial communities by integrating computational mass spectrometry and metagenome miningDP2GM137413 · NIGMS · CARNEGIE-MELLON UNIVERSITY · PI MOHIMANI, HOSEIN · 2019 to 2019
$2.2M
Reuse of Public Metabolomics DataR03CA211211 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DORRESTEIN, PIETER C · 2016 to 2016
$155k
NCI NIH HHS R03 CA211211NIGMS NIH HHS DP2 GM137413NIGMS NIH HHS P41 GM103484NIGMS NIH HHS R01 GM107550NIH HHS 1DP2GM137413-01
6 · The paper itself

Abstract

objectiveAntibiotic resistance by beta lactamase expression is a serious and growing threat. We aimed to determine whether beta-lactamase activity is detectable in urine specimens to enable faster identification of resistance.

methodsUrine specimens from patients with extended spectrum beta lactamase (ESBL)-expressing urinary infections were incubated with beta lactam antibiotics. Beta lactam hydrolysis was determined by mass spectrometry methods.

resultsCeftriaxone hydrolysis was observed in 45 of 45 ESBL-containing specimens from patients not treated with a beta lactamase inhibitor before specimen collection. Ceftriaxone hydrolysis was not observed in 108 of 108 non-ESBL-containing specimens. Spiking studies show that beta lactam hydrolysis can be observed within 30 minutes. Beta lactam hydrolysis is evidenced by mass spectrometry preceded by either liquid chromatography or matrix-assisted laser desorption ionization specimen processing methods.

conclusionClinically significant beta lactamase activity is detectable directly from urine specimens. The described methods would enable the detection of beta lactam resistance 24 to 48 hours sooner than culture based methods.

Indexed as

beta-Lactamasesbeta-LactamsAnti-Bacterial Agentsbeta-Lactam ResistanceHumansHydrolysisSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationAnti-Bacterial Agentsbeta-Lactamasesbeta-Lactamsantibiotic resistanceantibiotic resistance testingbeta lactamasebeta lactam hydrolysisESBLmass-spectrometryurinary tract infection

Identifiers

PMID34403464
PMCPMC8900932
OpenAlexW3194685065

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.