Evidence map›Paper›PMID 34403463›Full record

ArticleNucleic acids research2021

The Rsm (Csr) post-transcriptional regulatory pathway coordinately controls multiple CRISPR-Cas immune systems.

Aroa Rey Campa, Leah M Smith, Hannah G Hampton, Sahil Sharma, Simon A Jackson, Thorsten Bischler, Cynthia M Sharma, Peter C Fineran

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
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  8. Review
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  11. Prokaryotic ncRNAs: Master regulators of gene expression.Current research in pharmacology and drug discovery · 2022
    Article
  12. Digging into the lesser-known aspects of CRISPR biology.International microbiology : the official journal of the Spanish Society for Microbiology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Aroa Rey CampaDepartment of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
Leah M SmithDepartment of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.ORCID 0000-0001-8223-8407
Hannah G HamptonDepartment of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.
Sahil SharmaChair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of Würzburg, 97080 Würzburg, Germany.ORCID 0000-0003-4067-5419
Simon A JacksonDepartment of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.ORCID 0000-0002-4512-3093
Thorsten BischlerCore Unit Systems Medicine, University of Würzburg, 97080 Würzburg, Germany.ORCID 0000-0001-9288-9481
Cynthia M SharmaChair of Molecular Infection Biology II, Institute of Molecular Infection Biology (IMIB), University of Würzburg, 97080 Würzburg, Germany.ORCID 0000-0002-2321-9705
Peter C FineranDepartment of Microbiology and Immunology, University of Otago, PO Box 56, Dunedin 9054, New Zealand.ORCID 0000-0002-4639-6704
University of Otago · NZUniversity of Würzburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

CRISPR-Cas systems provide bacteria with adaptive immunity against phages and plasmids; however, pathways regulating their activity are not well defined. We recently developed a high-throughput genome-wide method (SorTn-seq) and used this to uncover CRISPR-Cas regulators. Here, we demonstrate that the widespread Rsm/Csr pathway regulates the expression of multiple CRISPR-Cas systems in Serratia (type I-E, I-F and III-A). The main pathway component, RsmA (CsrA), is an RNA-binding post-transcriptional regulator of carbon utilisation, virulence and motility. RsmA binds cas mRNAs and suppresses type I and III CRISPR-Cas interference in addition to adaptation by type I systems. Coregulation of CRISPR-Cas and flagella by the Rsm pathway allows modulation of adaptive immunity when changes in receptor availability would alter susceptibility to flagella-tropic phages. Furthermore, we show that Rsm controls CRISPR-Cas in other genera, suggesting conservation of this regulatory strategy. Finally, we identify genes encoding RsmA homologues in phages, which have the potential to manipulate the physiology of host bacteria and might provide an anti-CRISPR activity.

Indexed as

Adaptive ImmunityBacterial ProteinsBacteriophagesCRISPR-Cas SystemsFlagellaGene Expression Regulation, BacterialPlasmidsRepressor ProteinsRNA-Binding ProteinsRNA, MessengerRNA Processing, Post-TranscriptionalSerratiaSignal TransductionVirulenceBacterial ProteinsRepressor ProteinsRNA-Binding ProteinsRNA, MessengerRsmA protein, Erwinia carotovora

Identifiers

PMID34403463
PMCPMC8450108
OpenAlexW3193881130

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.