Evidence map›Paper›PMID 34399691›Full record

ArticleBMC microbiology2021

Scattered migrating colony formation in the filamentous cyanobacterium, Pseudanabaena sp. NIES-4403.

Hiroki Yamamoto, Yuki Fukasawa, Yu Shoji, Shumpei Hisamoto, Tomohiro Kikuchi, Atsuko Takamatsu, Hideo Iwasaki

Abstract read
In one paragraph

Article in BMC microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Hiroki YamamotoDepartment of Electrical Engineering and Bioscience, Waseda University, Shinjuku, Tokyo, 162-8480, Japan.
Yuki FukasawaDepartment of Electrical Engineering and Bioscience, Waseda University, Shinjuku, Tokyo, 162-8480, Japan.
Yu ShojiDepartment of Electrical Engineering and Bioscience, Waseda University, Shinjuku, Tokyo, 162-8480, Japan.
Shumpei HisamotoDepartment of Electrical Engineering and Bioscience, Waseda University, Shinjuku, Tokyo, 162-8480, Japan.
Tomohiro KikuchiDepartment of Electrical Engineering and Bioscience, Waseda University, Shinjuku, Tokyo, 162-8480, Japan.
Atsuko TakamatsuDepartment of Electrical Engineering and Bioscience, Waseda University, Shinjuku, Tokyo, 162-8480, Japan.
Hideo IwasakiDepartment of Electrical Engineering and Bioscience, Waseda University, Shinjuku, Tokyo, 162-8480, Japan. hideo-iwasaki@waseda.jp.ORCID 0000-0002-3754-4955

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBacteria have been reported to exhibit complicated morphological colony patterns on solid media, depending on intracellular, and extracellular factors such as motility, cell propagation, and cell-cell interaction. We isolated the filamentous cyanobacterium, Pseudanabaena sp. NIES-4403 (Pseudanabaena, hereafter), that forms scattered (discrete) migrating colonies on solid media. While the scattered colony pattern has been observed in some bacterial species, the mechanism underlying such a pattern still remains obscure.

resultsWe studied the morphology of Pseudanabaena migrating collectively and found that this species forms randomly scattered clusters varying in size and further consists of a mixture of comet-like wandering clusters and disk-like rotating clusters. Quantitative analysis of the formation of these wandering and rotating clusters showed that bacterial filaments tend to follow trajectories of previously migrating filaments at velocities that are dependent on filament length. Collisions between filaments occurred without crossing paths, which enhanced their nematic alignments, giving rise to bundle-like colonies. As cells increased and bundles aggregated, comet-like wandering clusters developed. The direction and velocity of the movement of cells in comet-like wandering clusters were highly coordinated. When the wandering clusters entered into a circular orbit, they turned into rotating clusters, maintaining a more stable location. Disk-like rotating clusters may rotate for days, and the speed of cells within a rotating cluster increases from the center to the outmost part of the cluster. Using a mathematical modeling with simplified assumption we reproduced some features of the scattered pattern including migrating clusters.

conclusionBased on these observations, we propose that Pseudanabaena forms scattered migrating colonies that undergo a series of transitions involving several morphological patterns. A simplified model is able to reproduce some features of the observed migrating clusters.

Indexed as

Colony Count, MicrobialCyanobacteriaMovementPondsCell motilityCollective behaviorColony pattern formationCyanobacteria

Identifiers

PMID34399691
PMCPMC8365994

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.