Evidence map›Paper›PMID 34399620›Full record

ArticlemBio2021

Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship.

Candice L Swift, Katherine B Louie, Benjamin P Bowen, Casey A Hooker, Kevin V Solomon, Vasanth Singan, Chris Daum, Christa P Pennacchio, Kerrie Barry, Vaithiyalingam Shutthanandan and 4 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 23 citations in OpenAlex.

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  16. Impact ofMicrobiology spectrum · 2022
    Article
  17. Impact ofFrontiers in microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 1 country.

Candice L SwiftDepartment of Chemical Engineering, University of California Santa Barbara, Santa Barbara, California, USA.
Katherine B LouieU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Benjamin P BowenU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Casey A HookerDepartment of Agricultural & Biological Engineering, Purdue University, West Lafayette, Indiana, USA.
Kevin V SolomonDepartment of Agricultural & Biological Engineering, Purdue University, West Lafayette, Indiana, USA.
Vasanth SinganU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Chris DaumU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Christa P PennacchioU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Kerrie BarryU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Vaithiyalingam ShutthanandanEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratorygrid.451303.0, Richland, Washington, USA.
James E EvansEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratorygrid.451303.0, Richland, Washington, USA.
Igor V GrigorievU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Trent R NorthenU.S. Department of Energy Joint Genome Institute, Lawrence Berkeley National Laboratorygrid.184769.5, Berkeley, California, USA.
Michelle A O'MalleyDepartment of Chemical Engineering, University of California Santa Barbara, Santa Barbara, California, USA.
Lawrence Berkeley National Laboratory · USPacific Northwest National Laboratory · USPurdue University West Lafayette · USUniversity of California, Santa Barbara · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Anaerobic gut fungi (Neocallimastigomycetes) live in the digestive tract of large herbivores, where they are vastly outnumbered by bacteria. It has been suggested that anaerobic fungi challenge growth of bacteria owing to the wealth of biosynthetic genes in fungal genomes, although this relationship has not been experimentally tested. Here, we cocultivated the rumen bacteria

Indexed as

AntibiosisAnaerobiosisAnimalsBacteriaFungiGene Expression ProfilingGenome, BacterialGenome, FungalMicrobiological TechniquesRumenSheepanaerobeanaerobic fungicocultivationfungiRNA-seqsecondary metabolismtranscriptomics

Identifiers

PMID34399620
PMCPMC8406330
OpenAlexW3194829787

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.