Evidence map›Paper›PMID 34399614›Full record

ArticlemBio2021

A Fungal Secretome Adapted for Stress Enabled a Radical Wood Decay Mechanism.

Jesus Castaño, Jiwei Zhang, Mowei Zhou, Chia-Feng Tsai, Joon Yong Lee, Carrie Nicora, Jonathan Schilling

Open access · goldAbstract read
In one paragraph

Article in mBio, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
5.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 30 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Jesus CastañoBioproducts and Biosystems Engineering, University of Minnesotagrid.17635.36, Saint Paul, Minnesota, USA.
Jiwei ZhangBioproducts and Biosystems Engineering, University of Minnesotagrid.17635.36, Saint Paul, Minnesota, USA.
Mowei ZhouEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington, USA.
Chia-Feng TsaiBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Joon Yong LeeEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington, USA.
Carrie NicoraBiological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
Jonathan SchillingPlant and Microbial Biology, University of Minnesotagrid.17635.36, Saint Paul, Minnesota, USA.
Environmental Molecular Sciences Laboratory · USPacific Northwest National Laboratory · USUniversity of Minnesota · USJosé Benito Vives de Andréis Marine and Coastal Research Institute · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Brown rot fungi release massive amounts of carbon from forest deadwood, particularly at high latitudes. These fungi degrade wood by generating small reactive oxygen species (ROS) to loosen lignocellulose, to then selectively remove carbohydrates. The ROS mechanism has long been considered the key adaptation defining brown rot wood decomposition, but recently, we found preliminary evidence that fungal glycoside hydrolases (GHs) implicated in early cell wall loosening might have been adapted to tolerate ROS stress and to synergize with ROS to loosen woody lignocellulose. In the current study, we found more specifically that side chain hemicellulases that help in the early deconstruction of the lignocellulosic complex are significantly more tolerant of ROS in the brown rot fungus Rhodonia placenta than in a white rot fungus (Trametes versicolor) and a soft rot fungus (Trichoderma reesei). Using proteomics to understand the extent of tolerance, we found that significant oxidation of secreted R. placenta proteins exposed to ROS was less than half of the oxidation observed for T. versicolor or T. reesei. The principal oxidative modifications observed in all cases were monooxidation and dioxidation/trioxidation (mainly in methionine and tryptophan residues), some of which were critical for enzyme activity. At the peptide level, we found that GHs in

Indexed as

SecretomeStress, PhysiologicalCell WallFungal ProteinsFungiGlycoside HydrolasesHydrolysisLigninOxidation-ReductionPolyporalesWoodFungal ProteinsGlycoside HydrolaseshemicellulaseLigninlignocellulosebrown rot fungiglycosyl hydrolasesproteomicsROS tolerance

Identifiers

PMID34399614
PMCPMC8406313
OpenAlexW3195616427

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.