Evidence map›Paper›PMID 34395725›Full record

ArticleBio-protocol2021

Preparation of Human Chondrocytes for Profiling Using Cytometry by Time-of-flight (cyTOF).

Fiorella Carla Grandi, Nidhi Bhutani

Open access · bronzeAbstract read
In one paragraph

Article in Bio-protocol, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 93% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Fiorella Carla GrandiDepartment of Orthopedic Surgery, School of Medicine, Stanford University, Stanford, CA 94303, USA.
Nidhi BhutaniDepartment of Orthopedic Surgery, School of Medicine, Stanford University, Stanford, CA 94303, USA.
Stanford University · US

Funding

Establishing a Single-Cell Proteomic Atlas for Normal and Osteoarthritic Articular CartilageR01AR077530 · NIAMS · STANFORD UNIVERSITY · PI BHUTANI, NIDHI · 2021 to 2025
$2.6M
Evaluating the Potential of Human Induced Pluripotent Stem Cells (hiPSC) For Cartilage RepairR01AR070864 · NIAMS · STANFORD UNIVERSITY · PI BHUTANI, NIDHI · 2017 to 2021
$2.2M
Targeting DNA Demethylation Regulators in OsteoarthritisR01AR070865 · NIAMS · STANFORD UNIVERSITY · PI BHUTANI, NIDHI · 2016 to 2020
$1.7M
NIAMS NIH HHS R01 AR070864NIAMS NIH HHS R01 AR070865NIAMS NIH HHS R01 AR077530
6 · The paper itself

Abstract

Single-cell technologies have allowed high-resolution profiling of tissues and thus a deeper understanding of tissue homeostasis and disease heterogeneity. Understanding this heterogeneity can be especially important for tailoring treatments in a patient-specific manner. Here, we detail methods for preparing human cartilage tissue for profiling via cytometry by time-of-flight (cyTOF). We have previously utilized this method to characterize several rare cell populations in cartilage, including cartilage-progenitor cells, inflammation-amplifying cells (Inf-A), and inflammation-dampening cells (Inf-D). Previous bio-protocols have focused on cyTOF staining of PBMCs. Therefore, here we detail the steps unique to the processing of human cartilage and chondrocytes. Briefly, cartilage tissue is digested to release individual chondrocytes, which can be expanded and manipulated in culture. These cells are then collected and fixed in preparation for cyTOF, followed by standard staining and analysis protocols.

Indexed as

CartilageChondrocytescyTOFMusculoskeletalSingle-cell

Identifiers

PMID34395725
PMCPMC8329458
OpenAlexW3184559483

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.