ArticleFrontiers in microbiology2021
The EcoCyc Database in 2021.
Open access · goldAbstract read
In one paragraph
Article in Frontiers in microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 142 papers.
0numbers the graph read from it
0cells of the map it votes in
142citing papers in PubMed
32.0field-weighted citation impact, top 1% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
142 citing papers in PubMed, 227 citations in OpenAlex.
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- Genome-wide analysis of the Escherichia coli Keio collection reveals genetic determinants associated with ferulic acid responses.Folia microbiologica · 2026Article
- Metagenomic and Metabolomic Correlates of Immunotherapy Response in Non-Small Cell Lung Cancer.Research square · 2026Article
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- Gene loss and compensatory evolution as a source of metabolic preadaptations.Molecular biology and evolution · 2026Article
- Informational blueprints reveal condition-dependent gene regulatory architectures.bioRxiv : the preprint server for biology · 2026Article
- Gene expression plasticity under multiple stresses drives higher tolerance to a macrolide in saline and warmer environments.npj antimicrobials and resistance · 2026Article
- Systematic discovery of enzyme promiscuity in Escherichia coli using in vitro metabolomics.Communications biology · 2026Article
- Strain-level microbial signatures and inferred functional alterations in infants with food protein-induced allergic proctocolitis.Genome medicine · 2026Article
- Overexpression of Escherichia coli yaiX Confers Multidrug Resistance and Enhances Virulence in the Silkworm Infection Model.Microbiology and immunology · 2026Article
- Toward a systems metabolic engineering approach to improve thermotolerance of Escherichia coli.Microbial cell factories · 2026Review
- Bacterial iron acquisition byProceedings of the National Academy of Sciences of the United States of America · 2026Article
- One health analysis of antimicrobial resistance inBioinformatics advances · 2026Article
- The glucose uptake inhibitor SgrS is induced by D-serine yet does not contribute to growth arrest in enterohaemorrhagicMicrobiology (Reading, England) · 2026Article
- Biology of host-dependent restriction-modification in prokaryotes.EcoSal Plus · 2025Review
- The EcoCyc database (2025).EcoSal Plus · 2025Review
- Genome-wide Screening of the Escherichia coli Keio Knockout Collection Identifies Genetic Determinants of Epetraborole Hypersusceptibility.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025Article
- Are Bacterial Processes Dependent on Global Ribosome Pausing Affected by tRNA Modification Defects?Journal of molecular biology · 2025Review
82 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
19 authors at 5 institutions in 3 countries.
Ingrid M KeselerBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
Socorro Gama-CastroCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, México.
Amanda MackieDepartment of Molecular Sciences, Macquarie University, Sydney, NSW, Australia.
Richard BillingtonBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
César Bonavides-MartínezCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, México.
Ron CaspiBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
Anamika KothariBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
Markus KrummenackerBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
Peter E MidfordBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
Luis Muñiz-RascadoCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, México.
Wai Kit OngBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
Suzanne PaleyBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
Alberto Santos-ZavaletaCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, México.
Pallavi SubhravetiBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
Víctor H TierrafríaCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, México.
Alan J WolfeDepartment of Microbiology and Immunology, Stritch School of Medicine, Loyola University Chicago, Maywood, IL, United States.
Julio Collado-VidesCentro de Ciencias Genómicas, Universidad Nacional Autónoma de México, Cuernavaca, México.
Ian T PaulsenDepartment of Molecular Sciences, Macquarie University, Sydney, NSW, Australia.
Peter D KarpBioinformatics Research Group, Artificial Intelligence Center, SRI International, Menlo Park, CA, United States.
SRI International · USUniversidad Nacional Autónoma de México · MXMacquarie University · AUBoston University · USLoyola University Chicago · US
Funding
The EcoCyc Model Organism Database for Escherichia coli [SRI Proposal ECU 14-631]U24GM077678 · NIGMS · SRI INTERNATIONAL · PI KARP, PETER D · 2006 to 2018
$12.3MThe EcoCyc Model Organism Database for Escherichia coliR01GM077678 · NIGMS · SRI INTERNATIONAL · PI KARP, PETER D · 2019 to 2022
$4.6MHIGH THROUGHPUT LITERATURE CURATION OF GENETIC REGULATION IN BACTERIAL MODELSR01GM110597 · NIGMS · CENTER FOR GENOMIC SCIENCES · PI COLLADO-VIDES, JULIO · 2015 to 2018
$1.6MNIGMS NIH HHS R01 GM077678NIGMS NIH HHS R01 GM110597NIGMS NIH HHS U24 GM077678
Abstract
The EcoCyc model-organism database collects and summarizes experimental data for
Indexed as
drug efflux transportersEcoCycEscherichia coligene regulationmetabolismmodel-organism database
Identifiers
What OpenQuestion holds
Textmetadata
LicenceCC BY
Read underepoch 390
Registered trials
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.