Evidence map›Paper›PMID 34393704›Full record

ArticleFrontiers in neuroscience2021

Gene Expression Analysis in Three Posttraumatic Stress Disorder Cohorts Implicates Inflammation and Innate Immunity Pathways and Uncovers Shared Genetic Risk With Major Depressive Disorder.

Melanie E Garrett, Xue Jun Qin, Divya Mehta, Michelle F Dennis, Christine E Marx, Gerald A Grant, VA Mid-Atlantic MIRECC Workgroup, PTSD Initiative, Injury and Traumatic Stress (INTRuST) Clinical Consortium, Psychiatric Genomics Consortium PTSD Group and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in neuroscience, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Post-traumatic stress disorder: evolving conceptualization and evidence, and future research directions.World psychiatry : official journal of the World Psychiatric Association (WPA) · 2025
    Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Candidate biomarkers in psychiatric disorders: state of the field.World psychiatry : official journal of the World Psychiatric Association (WPA) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Melanie E GarrettDuke Molecular Physiology Institute, Duke University Medical Center, Durham, NC, United States.
Xue Jun QinDuke Molecular Physiology Institute, Duke University Medical Center, Durham, NC, United States.
Divya MehtaQueensland University of Technology, Centre for Genomics and Personalised Health, Faculty of Health, Institute of Health and Biomedical Innovation, Kelvin Grove, QLD, Australia.
Michelle F DennisDurham Veterans Affairs Health Care System, Durham, NC, United States.
Christine E MarxDurham Veterans Affairs Health Care System, Durham, NC, United States.
Gerald A GrantDepartment of Neurosurgery, Stanford University School of Medicine, Stanford, CA, United States.
VA Mid-Atlantic MIRECC Workgroup
PTSD Initiative
Injury and Traumatic Stress (INTRuST) Clinical Consortium
Psychiatric Genomics Consortium PTSD Group
Murray B SteinDepartment of Psychiatry, School of Medicine, University of California, San Diego, La Jolla, CA, United States.
Nathan A KimbrelDurham Veterans Affairs Health Care System, Durham, NC, United States.
Jean C BeckhamDurham Veterans Affairs Health Care System, Durham, NC, United States.
Michael A HauserDuke Molecular Physiology Institute, Duke University Medical Center, Durham, NC, United States.
Allison E Ashley-KochDuke Molecular Physiology Institute, Duke University Medical Center, Durham, NC, United States.
Duke University · USDuke Medical Center · USQueensland University of Technology · AUStanford University · USUniversity of California San Diego · US

Funding

BLRD VA I01 BX002577BLRD VA IK6 BX003777CSRD VA IK2 CX001600
6 · The paper itself

Abstract

Posttraumatic stress disorder (PTSD) is a complex psychiatric disorder that can develop following exposure to traumatic events. The Psychiatric Genomics Consortium PTSD group (PGC-PTSD) has collected over 20,000 multi-ethnic PTSD cases and controls and has identified both genetic and epigenetic factors associated with PTSD risk. To further investigate biological correlates of PTSD risk, we examined three PGC-PTSD cohorts comprising 977 subjects to identify differentially expressed genes among PTSD cases and controls. Whole blood gene expression was quantified with the HumanHT-12 v4 Expression BeadChip for 726 OEF/OIF veterans from the Veterans Affairs (VA) Mental Illness Research Education and Clinical Center (MIRECC), 155 samples from the Injury and Traumatic Stress (INTRuST) Clinical Consortium, and 96 Australian Vietnam War veterans. Differential gene expression analysis was performed in each cohort separately followed by meta-analysis. In the largest cohort, we performed co-expression analysis to identify modules of genes that are associated with PTSD and MDD. We then conducted expression quantitative trait loci (eQTL) analysis and assessed the presence of eQTL interactions involving PTSD and major depressive disorder (MDD). Finally, we utilized PTSD and MDD GWAS summary statistics to identify regions that colocalize with eQTLs. Although not surpassing correction for multiple testing, the most differentially expressed genes in meta-analysis were interleukin-1 beta (

Indexed as

gene expressionmajor depressive disordermeta-analysismulti-ethnicposttraumatic stress disorderquantitative trait loci

Identifiers

PMID34393704
PMCPMC8358297
OpenAlexW3192124035

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.