Evidence map›Paper›PMID 34389721›Full record

ArticleNature communications2021

Mapping the biosynthetic pathway of a hybrid polyketide-nonribosomal peptide in a metazoan.

Likui Feng, Matthew T Gordon, Ying Liu, Kari B Basso, Rebecca A Butcher

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. An Alkaloid Biosynthetic Gene Bundle in Animals.Journal of the American Chemical Society · 2026
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Animal-Encoded Nonribosomal Pathway to Bursatellin Analogs.Journal of the American Chemical Society · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Comparative analysis of new, mScarlet-based red fluorescent tags inbioRxiv : the preprint server for biology · 2024
    Article
  13. Review
  14. Reactivity and mechanism in chemical and synthetic biology.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Likui FengDepartment of Chemistry, University of Florida, Gainesville, FL, USA.ORCID 0000-0003-4601-4224
Matthew T GordonDepartment of Chemistry, University of Florida, Gainesville, FL, USA.ORCID 0000-0002-4572-1050
Ying LiuDepartment of Chemistry, University of Florida, Gainesville, FL, USA.
Kari B BassoDepartment of Chemistry, University of Florida, Gainesville, FL, USA.ORCID 0000-0003-1268-6655
Rebecca A ButcherDepartment of Chemistry, University of Florida, Gainesville, FL, USA. butcher@chem.ufl.edu.ORCID 0000-0002-0925-4459
University of Florida · US

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Ann E. Rougvie · 2012 to 2026
$7.5M
Small-molecule signals controlling nematode developmentR01GM118775 · NIGMS · UNIVERSITY OF FLORIDA · PI BUTCHER, REBECCA A · 2016 to 2020
$1.2M
Acquisition of a Q Exactive HF Hybrid Quadrupole-OrbitrapS10OD021758 · OD · UNIVERSITY OF FLORIDA · PI BASSO, KARI B · 2017 to 2017
$600k
NIGMS NIH HHS R01 GM118775NIH HHS P40 OD010440NIH HHS S10 OD021758
6 · The paper itself

Abstract

Polyketide synthase (PKS) and nonribosomal peptide synthetase (NRPS) hybrid systems typically use complex protein-protein interactions to facilitate direct transfer of intermediates between these multimodular megaenzymes. In the canal-associated neurons (CANs) of Caenorhabditis elegans, PKS-1 and NRPS-1 produce the nemamides, the only known hybrid polyketide-nonribosomal peptides biosynthesized by animals, through a poorly understood mechanism. Here, we use genome editing and mass spectrometry to map the roles of individual PKS-1 and NRPS-1 enzymatic domains in nemamide biosynthesis. Furthermore, we show that nemamide biosynthesis requires at least five additional enzymes expressed in the CANs that are encoded by genes distributed across the worm genome. We identify the roles of these enzymes and discover a mechanism for trafficking intermediates between a PKS and an NRPS. Specifically, the enzyme PKAL-1 activates an advanced polyketide intermediate as an adenylate and directly loads it onto a carrier protein in NRPS-1. This trafficking mechanism provides a means by which a PKS-NRPS system can expand its biosynthetic potential and is likely important for the regulation of nemamide biosynthesis.

Indexed as

AnimalsAnimals, Genetically ModifiedBiosynthetic PathwaysCaenorhabditis elegansCaenorhabditis elegans ProteinsChromatography, LiquidEnzymesGene ExpressionMass SpectrometryMolecular StructureMutationNeuronsPeptidesPeptide SynthasesPolyketidesPolyketide SynthasesCaenorhabditis elegans ProteinsEnzymesnon-ribosomal peptide synthasePeptidesPeptide SynthasesPolyketidesPolyketide Synthases

Identifiers

PMID34389721
PMCPMC8363725
OpenAlexW3187222193

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.