Evidence map›Paper›PMID 34389719›Full record

ArticleNature communications2021

Nucleolar release of rDNA repeats for repair involves SUMO-mediated untethering by the Cdc48/p97 segregase.

Matías Capella, Imke K Mandemaker, Lucía Martín Caballero, Fabian den Brave, Boris Pfander, Andreas G Ladurner, Stefan Jentsch, Sigurd Braun

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
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  5. Article
  6. Review
  7. Multifaceted roles of SUMO in DNA metabolism.Nucleus (Austin, Tex.) · 2024
    Review
  8. Review
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Nuclear Condensates: New Targets to Combat Parasite Immune Evasion?Frontiers in cellular and infection microbiology · 2022
    Article
  16. Review
  17. Advances in SUMO-based regulation of homologous recombination.Current opinion in genetics & development · 2021
    Review
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 1 country.

Matías CapellaDepartment of Physiological Chemistry, BioMedical Center (BMC), Ludwig-Maximillians-Universität München, Planegg-Martinsried, Germany. matias.capella@bmc.med.lmu.de.ORCID 0000-0003-4804-243X
Imke K MandemakerDepartment of Physiological Chemistry, BioMedical Center (BMC), Ludwig-Maximillians-Universität München, Planegg-Martinsried, Germany.ORCID 0000-0002-5386-6276
Lucía Martín CaballeroDepartment of Physiological Chemistry, BioMedical Center (BMC), Ludwig-Maximillians-Universität München, Planegg-Martinsried, Germany.
Fabian den BraveMax Planck Institute of Biochemistry, Molecular Cell Biology, Planegg-Martinsried, Germany.ORCID 0000-0001-6955-4616
Boris PfanderInternational Max Planck Research School for Molecular and Cellular Life Sciences, Planegg-Martinsried, Germany.ORCID 0000-0003-2180-5054
Andreas G LadurnerDepartment of Physiological Chemistry, BioMedical Center (BMC), Ludwig-Maximillians-Universität München, Planegg-Martinsried, Germany.
Stefan JentschMax Planck Institute of Biochemistry, Molecular Cell Biology, Planegg-Martinsried, Germany.
Sigurd BraunDepartment of Physiological Chemistry, BioMedical Center (BMC), Ludwig-Maximillians-Universität München, Planegg-Martinsried, Germany. sigurd.braun@gen.bio.uni-giessen.de.ORCID 0000-0001-6399-8574
Max Planck Institute of Biochemistry · DEJustus-Liebig-Universität Gießen · DELudwig-Maximilians-Universität München · DEUniversity of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ribosomal RNA genes (rDNA) are highly unstable and susceptible to rearrangement due to their repetitive nature and active transcriptional status. Sequestration of rDNA in the nucleolus suppresses uncontrolled recombination. However, broken repeats must be first released to the nucleoplasm to allow repair by homologous recombination. Nucleolar release of broken rDNA repeats is conserved from yeast to humans, but the underlying molecular mechanisms are currently unknown. Here we show that DNA damage induces phosphorylation of the CLIP-cohibin complex, releasing membrane-tethered rDNA from the nucleolus in Saccharomyces cerevisiae. Downstream of phosphorylation, SUMOylation of CLIP-cohibin is recognized by Ufd1 via its SUMO-interacting motif, which targets the complex for disassembly through the Cdc48/p97 chaperone. Consistent with a conserved mechanism, UFD1L depletion in human cells impairs rDNA release. The dynamic and regulated assembly and disassembly of the rDNA-tethering complex is therefore a key determinant of nucleolar rDNA release and genome integrity.

Indexed as

DNA RepairCell Cycle ProteinsCell NucleolusDNA DamageDNA, RibosomalHumansMembrane ProteinsMutationNuclear ProteinsPhosphorylationProtein BindingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSmall Ubiquitin-Related Modifier ProteinsSumoylationTwo-Hybrid System TechniquesCell Cycle ProteinsCSM1 protein, S cerevisiaeDNA, RibosomalLRS4 protein, S cerevisiaeMembrane ProteinsNuclear ProteinsNur1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSmall Ubiquitin-Related Modifier ProteinsSrc1 protein, S cerevisiaeValosin Containing Protein

Identifiers

PMID34389719
PMCPMC8363623
OpenAlexW3191389004

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.