Evidence map›Paper›PMID 34389714›Full record

ArticleNature communications2021

Genotoxic stress and viral infection induce transient expression of APOBEC3A and pro-inflammatory genes through two distinct pathways.

Sunwoo Oh, Elodie Bournique, Danae Bowen, Pégah Jalili, Ambrocio Sanchez, Ian Ward, Alexandra Dananberg, Lavanya Manjunath, Genevieve P Tran, Bert L Semler and 3 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Squamous-state excursions activate APOBEC3A in cancer.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. HAMMER: Hairpin-based APOBEC3A-mediated mRNA editing reporter.bioRxiv : the preprint server for biology · 2026
    Article
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  10. Review
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Sunwoo Oh *Department of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, California, USA.ORCID http://orcid.org/0000-0001-9205-4660
Elodie Bournique *Department of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, California, USA.ORCID http://orcid.org/0000-0003-0196-7996
Danae BowenDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, California, USA.
Pégah JaliliDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, California, USA.ORCID http://orcid.org/0000-0002-8098-0154
Ambrocio SanchezDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, California, USA.ORCID http://orcid.org/0000-0003-1462-1767
Ian WardDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, California, USA.
Alexandra DananbergMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York, USA.
Lavanya ManjunathDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, California, USA.ORCID http://orcid.org/0000-0003-1898-3570
Genevieve P TranDepartment of Microbiology and Molecular Genetics, UCI Center for Virus Research, School of Medicine, University of California Irvine, Irvine, California, USA.
Bert L SemlerDepartment of Microbiology and Molecular Genetics, UCI Center for Virus Research, School of Medicine, University of California Irvine, Irvine, California, USA.ORCID http://orcid.org/0000-0002-2424-5155
John MaciejowskiMolecular Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, New York, USA.ORCID http://orcid.org/0000-0001-8134-9308
Marcus SeldinDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, California, USA.
Rémi BuissonDepartment of Biological Chemistry, School of Medicine, University of California Irvine, Irvine, California, USA. rbuisson@uci.edu.ORCID http://orcid.org/0000-0002-7196-8209
University of California, Irvine · USMemorial Sloan Kettering Cancer Center · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Univ.of Calif., Irvine Cancer Center Support GrantP30CA062203 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Christine Hui · 1994 to 2026
$57.9M
NIDDK Network Coordinating UnitU24DK097771 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Shuibing Chen, Jeffrey S. Grethe · 2013 to 2026
$20.9M
Impact of host protein dynamics on picornavirus RNA 5’ noncoding region functionsR01AI026765 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SEMLER, BERT L · 1988 to 2019
$5.9M
Molecular Mechanisms of APOBEC-Induced Mutagenesis in CancerR37CA252081 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI Remi Buisson · 2021 to 2026
$2.5M
TARGETING APOBEC3A-EXPRESSING CANCER CELLS WITH ATR INHIBITORSR00CA212154 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI BUISSON, REMI · 2018 to 2020
$747k
A strategy for discovery of endocrine interactionsR00HL138193 · NHLBI · UNIVERSITY OF CALIFORNIA-IRVINE · PI SELDIN, MARCUS MICHAEL · 2020 to 2022
$745k
The origins of chromosome rearrangement in the cancer genomeR00CA212290 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI MACIEJOWSKI, JOHN · 2018 to 2020
$654k
Functions of 5' NCRs of picornavirus and cellular mRNAsR56AI026765 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI SEMLER, BERT L · 2008 to 2008
$369k
Targeting APOBEC3A-expressing cancer cells with ATR inhibitorsK99CA212154 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI BUISSON, REMI · 2017 to 2018
$285k
Development of a strategy for endocrine axis discoveryK99HL138193 · NHLBI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SELDIN, MARCUS MICHAEL · 2018 to 2019
$268k
The origins of chromosome rearrangement in the cancer genomeK99CA212290 · NCI · ROCKEFELLER UNIVERSITY · PI MACIEJOWSKI, JOHN · 2016 to 2017
$240k
NCI NIH HHS K99 CA212154NCI NIH HHS K99 CA212290NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA062203NCI NIH HHS R00 CA212154NCI NIH HHS R00 CA212290NCI NIH HHS R37 CA252081NHLBI NIH HHS K99 HL138193NHLBI NIH HHS R00 HL138193NIAID NIH HHS R01 AI026765NIAID NIH HHS R56 AI026765NIDDK NIH HHS U24 DK097771
6 · The paper itself

Abstract

APOBEC3A is a cytidine deaminase driving mutagenesis in tumors. While APOBEC3A-induced mutations are common, APOBEC3A expression is rarely detected in cancer cells. This discrepancy suggests a tightly controlled process to regulate episodic APOBEC3A expression in tumors. In this study, we find that both viral infection and genotoxic stress transiently up-regulate APOBEC3A and pro-inflammatory genes using two distinct mechanisms. First, we demonstrate that STAT2 promotes APOBEC3A expression in response to foreign nucleic acid via a RIG-I, MAVS, IRF3, and IFN-mediated signaling pathway. Second, we show that DNA damage and DNA replication stress trigger a NF-κB (p65/IkBα)-dependent response to induce expression of APOBEC3A and other innate immune genes, independently of DNA or RNA sensing pattern recognition receptors and the IFN-signaling response. These results not only reveal the mechanisms by which tumors could episodically up-regulate APOBEC3A but also highlight an alternative route to stimulate the immune response after DNA damage independently of cGAS/STING or RIG-I/MAVS.

Indexed as

DNA DamageGene Expression RegulationCell LineCell Line, TumorCytidine DeaminaseHost-Pathogen InteractionsHumansImmunityProteinsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSignal TransductionTHP-1 CellsTranscription Factor RelAUp-RegulationVirusesAPOBEC3A protein, humanCytidine DeaminaseProteinsRNA, MessengerTranscription Factor RelA

Identifiers

PMID34389714
PMCPMC8363607
OpenAlexW3189317120

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.