Evidence map›Paper›PMID 34387804›Full record

ArticleMolecular biology reports2022

Explicating genetic diversity based on ITS characterization and determination of antioxidant potential in sea buckthorn (Hippophae spp.).

Syed Anam Ul Haq, Mudasir A Mir, Sameena M Lone, Aqleema Banoo, Fauzia Shafi, Shakeel A Mir, Javeed I A Bhat, Rizwan Rashid, Shabir H Wani, T H Masoodi and 3 more

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Article in Molecular biology reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

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3 · Its place in the literature

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3 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

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5 · Who and what money

Authors and funding

13 authors at 1 institution in 2 countries.

Syed Anam Ul HaqTranscriptomics Lab (K-Lab), Division of Plant Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, Srinagar, J&K, 190025, India.
Mudasir A MirTranscriptomics Lab (K-Lab), Division of Plant Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, Srinagar, J&K, 190025, India.
Sameena M LoneDivision of Vegetable Science, SKUAST-K, Srinagar, J&K, 190025, India.
Aqleema BanooDivision of Plant Pathology, SKUAST-K, Srinagar, J&K, 190025, India.
Fauzia ShafiDivision of Basic Sciences and Humanities, SKUAST-K, Srinagar, J&K, 190025, India.
Shakeel A MirDivision of Agricultural Statistics, SKUAST-K, Srinagar, J&K, 190025, India.
Javeed I A BhatDivision of Environmental Sciences, SKUAST-K, Srinagar, J&K, 190025, India.
Rizwan RashidDivision of Vegetable Science, SKUAST-K, Srinagar, J&K, 190025, India.
Shabir H WaniMountain Research Center for Field Crops, Khudwani,, SKUAST-K, Anantnag, J&K, 192102, India.
T H MasoodiFaculty of Forestry, Benihama-SKUAST-K, Ganderbal, J&K, 191201, India.
M N KhanTranscriptomics Lab (K-Lab), Division of Plant Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, Srinagar, J&K, 190025, India.
Firdous A NehviTranscriptomics Lab (K-Lab), Division of Plant Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, Srinagar, J&K, 190025, India.
Khalid Z MasoodiTranscriptomics Lab (K-Lab), Division of Plant Biotechnology, Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir, Srinagar, J&K, 190025, India. masoodikz@skuastkashmir.ac.in.ORCID http://orcid.org/0000-0002-4889-5558
Sher-e-Kashmir University of Agricultural Sciences and Technology of Kashmir · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSea buckthorn (Hippophae) is in the focus of interest mainly for its positive effects on health of both human and animal organisms. Due to the similarities in vegetative morphology, Hippophae species are often misidentified. Therefore, current study was focused on ITS based sequence characterization of sea buckthorn species and comparative biochemical evaluation for its antioxidant properties. METHODS AND

resultsDNA was extracted from leaf samples. Primer pairs K-Lab-SeaBukRhm-ITS1F1- K-Lab-SeaBukRhm-ITS1R1 and K-LabSeaBukTib- ITSF1- K-LabSeaBukTib-ITSR1 were used for PCR amplification. The purified PCR products were outsourced for sequencing. Phylogenetic tree was constructed based on neighbor-joining (NJ) method. Moreover, comparison of antioxidant potential of leaves of two sea buckthorn species (Hippophae rhamnoides and Hippophae tibetana) collected from different regions of Ladakh viz., Stakna, Nubra, DRDO Leh and Zanskar was determined by 2,2-diphenyl-1-picrylhydrazyl (DPPH), 2,2-azino-bis (3- ethylbenzothiazoline-6-sulphonic acid) diammonium salt (ABTS), and Total antioxidant capacity (TAC) by phosphomolybdenum assays. The present investigation led to the differentiation of two sea buckthorn species viz., H. rhamnoides and H. tibetana based on Internal Transcribed Spacer (ITS) region. Moreover, significant variation was observed in antioxidant potential of leaf extracts collected from different regions.

conclusionsPrimary ITS sequence analysis was found to be powerful tool for identification and genetic diversity studies in sea buckthorn. Leaves of sea buckthorn have pronounced antioxidant properties and can be used in food, neutraceuticals and pharmaceutical industries etc. The current study will pave the way to discover small bioactive molecules responsible for antioxidant and anticancer properties in sea buckthorn.

Indexed as

HippophaeAnimalsAntioxidantsFruitGenetic VariationPhylogenyPlant ExtractsAntioxidantsPlant ExtractsABTSBioautographyDNA barcodingDPPHHippophaeITS

Identifiers

PMID34387804
OpenAlexW3191714836

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.