Evidence map›Paper›PMID 34387687›Full record

ArticleNucleic acids research2021

Evidence for complex dynamics during U2 snRNP selection of the intron branchpoint.

Ching-Yang Kao, En-Cih Cao, Hsu Lei Wai, Soo-Chen Cheng

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ching-Yang KaoGenome and Systems Biology Degree Program, National Taiwan University, Taipei, Taiwan 106, Republic of China.
En-Cih CaoInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan 115, Republic of China.
Hsu Lei WaiInstitute of Molecular Biology, Academia Sinica, Taipei, Taiwan 115, Republic of China.
Soo-Chen ChengGenome and Systems Biology Degree Program, National Taiwan University, Taipei, Taiwan 106, Republic of China.ORCID 0000-0002-7570-9415
Institute of Molecular Biology, Academia Sinica · TWNational Taiwan University · TW

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Splicing of pre-mRNA is initiated by binding of U1 to the 5' splice site and of Msl5-Mud2 heterodimer to the branch site (BS). Subsequent binding of U2 displaces Msl5-Mud2 from the BS to form the prespliceosome, a step governing branchpoint selection and hence 3' splice site choice, and linking splicing to myelodysplasia and many cancers in human. Two DEAD-box proteins, Prp5 and Sub2, are required for this step, but neither is stably associated with the pre-mRNA during the reaction. Using BS-mutated ACT1 pre-mRNA, we previously identified a splicing intermediate complex, FIC, which contains U2 and Prp5, but cannot bind the tri-snRNP. We show here that Msl5 remains associated with the upstream cryptic branch site (CBS) in the FIC, with U2 binding a few bases downstream of the BS. U2 mutants that restore U2-BS base pairing enable dissociation of Prp5 and allows splicing to proceed. The CBS is required for splicing rescue by compensatory U2 mutants, and for formation of FIC, demonstrating a role for Msl5 in directing U2 to the BS, and of U2-BS base pairing for release of Prp5 and Msl5-Mud2 to form the prespliceosome. Our results provide insights into how the prespliceosome may form in normal splicing reaction.

Indexed as

ActinsAdenosine TriphosphatasesDEAD-box RNA HelicasesHumansRibonucleoprotein, U2 Small NuclearRNA, MessengerRNA SplicingRNA Splicing FactorsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSpliceosomesSplicing Factor U2AFAct1 protein, S cerevisiaeActinsAdenosine TriphosphatasesDEAD-box RNA HelicasesMSL5 protein, S cerevisiaeMUD2 protein, S cerevisiaePRP5 protein, S cerevisiaeRibonucleoprotein, U2 Small NuclearRNA-dependent ATPaseRNA, MessengerRNA Splicing FactorsSaccharomyces cerevisiae ProteinsSplicing Factor U2AF

Identifiers

PMID34387687
PMCPMC8464032
OpenAlexW3192601361

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.