Evidence map›Paper›PMID 34387015›Full record

ArticleChembiochem : a European journal of chemical biology2021

Development of Tyrphostin Analogues to Study Inhibition of the Mycobacterium tuberculosis Pup Proteasome System*.

Guido V Janssen, Susan Zhang, Remco Merkx, Christa Schiesswohl, Champak Chatterjee, K Heran Darwin, Paul P Geurink, Gerbrand J van der Heden van Noort, Huib Ovaa

Open access · hybridAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

Guido V JanssenOncode Institute and Department of Cell and Chemical Biology, Leiden University Medical Center, Einthovenweg 20, 2333 ZC, Leiden, The Netherlands.
Susan ZhangDepartment of Microbiology, New York University School of Medicine, 430 E. 29th Street, New York, New York 10016, USA.
Remco MerkxDivision of Cell Biology, Netherlands Cancer Institute, Plesmanlaan 121, 1066 CX, Amsterdam, The Netherlands.
Christa SchiesswohlDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
Champak ChatterjeeDepartment of Chemistry, University of Washington, Seattle, Washington 98195, USA.
K Heran DarwinDepartment of Microbiology, New York University School of Medicine, 430 E. 29th Street, New York, New York 10016, USA.
Paul P GeurinkOncode Institute and Department of Cell and Chemical Biology, Leiden University Medical Center, Einthovenweg 20, 2333 ZC, Leiden, The Netherlands.
Gerbrand J van der Heden van NoortOncode Institute and Department of Cell and Chemical Biology, Leiden University Medical Center, Einthovenweg 20, 2333 ZC, Leiden, The Netherlands.
Huib OvaaOncode Institute and Department of Cell and Chemical Biology, Leiden University Medical Center, Einthovenweg 20, 2333 ZC, Leiden, The Netherlands.
Leiden University Medical Center · NLNew York University · USOncode Institute · NLUniversity of Washington · USThe Netherlands Cancer Institute · NL

Funding

PROTEASOME-DEPENDENT DEGRADATION IN MYCOBACTERIUM TUBERCULOSISR01AI088075 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Katerina Heran Darwin · 2011 to 2026
$6.5M
Chemical Strategies to Investigate Gene Regulation By Histone SumoylationR01GM110430 · NIGMS · UNIVERSITY OF WASHINGTON · PI CHATTERJEE, CHAMPAK · 2014 to 2022
$2.5M
Burroughs Wellcome FundNIAID NIH HHS R01 AI088075NIGMS NIH HHS R01 GM110430Off-Road grantVIDI
6 · The paper itself

Abstract

Tuberculosis is a global health problem caused by infection with the Mycobacterium tuberculosis (Mtb) bacteria. Although antibiotic treatment has dramatically reduced the impact of tuberculosis on the population, the existence and spreading of drug resistant strains urgently demands the development of new drugs that target Mtb in a different manner than currently used antibiotics. The prokaryotic ubiquitin-like protein (Pup) proteasome system is an attractive target for new drug development as it is unique to Mtb and related bacterial genera. Using a Pup-based fluorogenic substrate, we screened for inhibitors of Dop, the Mtb depupylating protease, and identified I-OMe-Tyrphostin AG538 (1) and Tyrphostin AG538 (2). The hits were validated and determined to be fast-reversible, non-ATP competitive inhibitors. We synthesized >25 analogs of 1 and 2 and show that several of the synthesized compounds also inhibit the depupylation actions of Dop on native substrate, FabD-Pup. Importantly, the pupylation activity of PafA, the sole Pup ligase in Mtb, was also inhibited by some of these compounds.

Indexed as

Drug DevelopmentAnti-Bacterial AgentsBacterial ProteinsDose-Response Relationship, DrugEnzyme InhibitorsMicrobial Sensitivity TestsMolecular StructureMycobacterium tuberculosisStructure-Activity RelationshipTyrphostinsUbiquitinsAnti-Bacterial AgentsBacterial ProteinsEnzyme InhibitorsPup protein, Mycobacterium tuberculosisTyrphostinsUbiquitinsinhibitor screenMycobacterium tuberculosispup proteasome systemtuberculosis

Identifiers

PMID34387015
PMCPMC8596589
OpenAlexW3193265536

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.