Evidence map›Paper›PMID 34385683›Full record

ArticleNature chemical biology2021

Structures and function of the amino acid polymerase cyanophycin synthetase.

Itai Sharon, Asfarul S Haque, Marcel Grogg, Indrajit Lahiri, Dieter Seebach, Andres E Leschziner, Donald Hilvert, T Martin Schmeing

Abstract read
PubMed Publisher
In one paragraph

Article in Nature chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Cyanophycin modifications for applications in tissue scaffolding.Applied microbiology and biotechnology · 2024
    Article
  6. Article
  7. Structure and function of a hexameric cyanophycin synthetase 2.Protein science : a publication of the Protein Society · 2023
    Article
  8. Article
  9. Discovery of cyanophycin dipeptide hydrolase enzymes suggests widespread utility of the natural biopolymer cyanophycin.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Cyanophycin Modifications-Widening the Application Potential.Frontiers in bioengineering and biotechnology · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Itai SharonDepartment of Biochemistry and Centre de Recherche en Biologie Structurale, McGill University, Montréal, Quebec, Canada.ORCID http://orcid.org/0000-0002-5844-3133
Asfarul S HaqueDepartment of Biochemistry and Centre de Recherche en Biologie Structurale, McGill University, Montréal, Quebec, Canada.
Marcel GroggLaboratory of Organic Chemistry, ETH Zürich, Zürich, Switzerland.
Indrajit LahiriDepartment of Cellular and Molecular Medicine, and Section of Molecular Biology, Division of Biological Sciences, University of California San Diego (UCSD), La Jolla, CA, USA.
Dieter SeebachLaboratory of Organic Chemistry, ETH Zürich, Zürich, Switzerland.
Andres E LeschzinerDepartment of Cellular and Molecular Medicine, and Section of Molecular Biology, Division of Biological Sciences, University of California San Diego (UCSD), La Jolla, CA, USA.
Donald HilvertLaboratory of Organic Chemistry, ETH Zürich, Zürich, Switzerland.ORCID http://orcid.org/0000-0002-3941-621X
T Martin SchmeingDepartment of Biochemistry and Centre de Recherche en Biologie Structurale, McGill University, Montréal, Quebec, Canada. martin.schmeing@mcgill.ca.ORCID http://orcid.org/0000-0002-8061-0436
ETH Zurich · CHMcGill University · CAUniversity of California San Diego · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI MALCOLM S. CAPEL · 2018 to 2026
$34.2M
Pixel Array Detector for Macromolecular CrystallographyS10OD021527 · OD · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2016 to 2016
$2.0M
NIGMS NIH HHS P30 GM124165NIH HHS S10 OD021527
6 · The paper itself

Abstract

Cyanophycin is a natural biopolymer produced by a wide range of bacteria, consisting of a chain of poly-L-Asp residues with L-Arg residues attached to the β-carboxylate sidechains by isopeptide bonds. Cyanophycin is synthesized from ATP, aspartic acid and arginine by a homooligomeric enzyme called cyanophycin synthetase (CphA1). CphA1 has domains that are homologous to glutathione synthetases and muramyl ligases, but no other structural information has been available. Here, we present cryo-electron microscopy and X-ray crystallography structures of cyanophycin synthetases from three different bacteria, including cocomplex structures of CphA1 with ATP and cyanophycin polymer analogs at 2.6 Å resolution. These structures reveal two distinct tetrameric architectures, show the configuration of active sites and polymer-binding regions, indicate dynamic conformational changes and afford insight into catalytic mechanism. Accompanying biochemical interrogation of substrate binding sites, catalytic centers and oligomerization interfaces combine with the structures to provide a holistic understanding of cyanophycin biosynthesis.

Indexed as

BacteriaBacterial ProteinsGene Expression Regulation, BacterialGene Expression Regulation, EnzymologicModels, MolecularPeptide SynthasesProtein ConformationBacterial Proteinscyanophycin synthase, bacteriaPeptide Synthases

Identifiers

PMID34385683
OpenAlexW3190936437

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.