Evidence map›Paper›PMID 34385554›Full record

ArticleScientific reports2021

Integrated computational and experimental pipeline for quantifying local cell-matrix interactions.

Hugh Xiao, Ryan Y Nguyen, Ryan LaRanger, Erica L Herzog, Michael Mak

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Translational medicine for acute lung injury.Journal of translational medicine · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hugh Xiao *Department of Biomedical Engineering, Yale University, New Haven, CT, USA.
Ryan Y Nguyen *Department of Biomedical Engineering, Yale University, New Haven, CT, USA.
Ryan LaRangerDepartment of Biomedical Engineering, Yale University, New Haven, CT, USA.
Erica L HerzogDepartment of Medicine (Pulmonary, Critical Care and Sleep), Yale University School of Medicine, New Haven, CT, USA.
Michael MakDepartment of Biomedical Engineering, Yale University, New Haven, CT, USA. michael.mak@yale.edu.
Yale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Yale Liver CenterP30DK034989 · NIDDK · YALE UNIVERSITY · PI YASUKO IWAKIRI · 1986 to 2026
$31.1M
Convergent Graduate Training in Engineering, Physics and BiologyT32EB019941 · NIBIB · YALE UNIVERSITY · PI O'HERN, COREY · 2016 to 2020
$998k
Mechanical Self-Assembly of Dense Fibrotic Tumor Microenvironments: Mechanisms and TherapyR21EB026630 · NIBIB · YALE UNIVERSITY · PI MAK, MICHAEL · 2018 to 2020
$590k
NCATS NIH HHS UL1 TR001863NIBIB NIH HHS R21 EB026630NIBIB NIH HHS T32 EB019941NIDDK NIH HHS P30 DK034989
6 · The paper itself

Abstract

Cellular interactions with the extracellular matrix (ECM) play a key role in modulating biological processes. While studies have identified key molecular factors of these interactions, the mechanical regulation associated with these interactions is not well characterized. To address this, we present an image analysis platform to analyze time-dependent dynamics observed in lung fibroblasts embedded in a 3D collagen matrix. Combining drug studies with quantitative analysis of cell-matrix interactions, our results are able to provide cellular level quantitative insights for mechanical and biophysical phenomena relevant to cell-ECM interactions. This system overall represents an initial pipeline for understanding cell mechanics in a 3D collagen gel and their implications in a physiologically relevant context.

Indexed as

Cell CommunicationAlgorithmsCells, CulturedCollagenExtracellular MatrixHumansLungCollagen

Identifiers

PMID34385554
PMCPMC8361134
OpenAlexW3189869732

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.