Evidence map›Paper›PMID 34383744›Full record

ArticlePLoS genetics2021

Connection of core and tail Mediator modules restrains transcription from TFIID-dependent promoters.

Moustafa M Saleh, Célia Jeronimo, François Robert, Gabriel E Zentner

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Moustafa M SalehDepartment of Biology, Indiana University, Bloomington, Indiana, United States of America.ORCID 0000-0002-6531-5711
Célia JeronimoInstitut de recherches cliniques de Montréal, Montréal, Québec, Canada.
François RobertInstitut de recherches cliniques de Montréal, Montréal, Québec, Canada.ORCID 0000-0003-1054-5920
Gabriel E ZentnerDepartment of Biology, Indiana University, Bloomington, Indiana, United States of America.ORCID 0000-0002-0801-7646
Montreal Clinical Research Institute · CAIndiana University Bloomington · USIndiana University Health · US

Funding

Regulation of transcription by the Mediator complexR35GM128631 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI ZENTNER, GABRIEL · 2018 to 2020
$1.2M
CIHR MOP-133648CIHR MOP-162334NIGMS NIH HHS R35 GM128631
6 · The paper itself

Abstract

The Mediator coactivator complex is divided into four modules: head, middle, tail, and kinase. Deletion of the architectural subunit Med16 separates core Mediator (cMed), comprising the head, middle, and scaffold (Med14), from the tail. However, the direct global effects of tail/cMed disconnection are unclear. We find that rapid depletion of Med16 downregulates genes that require the SAGA complex for full expression, consistent with their reported tail dependence, but also moderately overactivates TFIID-dependent genes in a manner partly dependent on the separated tail, which remains associated with upstream activating sequences. Suppression of TBP dynamics via removal of the Mot1 ATPase partially restores normal transcriptional activity to Med16-depleted cells, suggesting that cMed/tail separation results in an imbalance in the levels of PIC formation at SAGA-requiring and TFIID-dependent genes. We propose that the preferential regulation of SAGA-requiring genes by tailed Mediator helps maintain a proper balance of transcription between these genes and those more dependent on TFIID.

Indexed as

Adenosine TriphosphatasesGene Expression ProfilingGene Expression Regulation, FungalMediator ComplexMutationPromoter Regions, GeneticSaccharomyces cerevisiae ProteinsSequence Analysis, RNATATA-Binding Protein Associated FactorsTATA-Box Binding ProteinTrans-ActivatorsTranscription, GeneticAdenosine TriphosphatasesMediator ComplexMOT1 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsSIN4 protein, S cerevisiaeSPT15 protein, S cerevisiaeTATA-Binding Protein Associated FactorsTATA-Box Binding ProteinTrans-Activators

Identifiers

PMID34383744
PMCPMC8384189
OpenAlexW3193107269

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.