Evidence map›Paper›PMID 34383169›Full record

ArticleGenetica2021

Transposable elements expression in Rhinella marina (cane toad) specimens submitted to immune and stress challenge.

Adriana Ludwig, Michelle Orane Schemberger, Camilla Borges Gazolla, Joana de Moura Gama, Iraine Duarte, Ana Luisa Kalb Lopes, Carolina Mathias, Desirrê Alexia Lourenço Petters-Vandresen, Michelle Louise Zattera, Daniel Pacheco Bruschi

Abstract read
PubMed Publisher
In one paragraph

Article in Genetica, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Adriana LudwigLaboratório de Ciências e Tecnologias Aplicadas em Saúde (LaCTAS), Instituto Carlos Chagas - Fiocruz-PR, Curitiba, Paraná, Brazil.
Michelle Orane SchembergerLaboratório de Biotecnologia Aplicada a Fruticultura, Departamento de Fitotecnia e Fitossanidade, Universidade Estadual de Ponta Grossa (UEPG), Ponta Grossa, Paraná, Brazil.
Camilla Borges GazollaPrograma de Pós-Graduação em Genética (PPG-GEN), Universidade Federal do Paraná (UFPR), Curitiba, Brazil.
Joana de Moura GamaPrograma de Pós-Graduação em Genética (PPG-GEN), Universidade Federal do Paraná (UFPR), Curitiba, Brazil.
Iraine DuartePrograma de Pós-Graduação em Genética (PPG-GEN), Universidade Federal do Paraná (UFPR), Curitiba, Brazil.
Ana Luisa Kalb LopesLaboratório de Ciências e Tecnologias Aplicadas em Saúde (LaCTAS), Instituto Carlos Chagas - Fiocruz-PR, Curitiba, Paraná, Brazil.
Carolina MathiasPrograma de Pós-Graduação em Genética (PPG-GEN), Universidade Federal do Paraná (UFPR), Curitiba, Brazil.
Desirrê Alexia Lourenço Petters-VandresenPrograma de Pós-Graduação em Genética (PPG-GEN), Universidade Federal do Paraná (UFPR), Curitiba, Brazil.
Michelle Louise ZatteraPrograma de Pós-Graduação em Genética (PPG-GEN), Universidade Federal do Paraná (UFPR), Curitiba, Brazil.
Daniel Pacheco BruschiPrograma de Pós-Graduação em Genética (PPG-GEN), Universidade Federal do Paraná (UFPR), Curitiba, Brazil. danielpachecobruschi@gmail.com.ORCID http://orcid.org/0000-0003-2181-1788
Universidade Federal do Paraná · BRFundação Carlos Chagas · BRUniversidade Estadual de Ponta Grossa · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Transposable elements (TEs) are important components of eukaryotic genomes and compose around 30% of the genome of Rhinella marina, an invasive toad species. Considering the possible role of TEs in the adaptation of populations, we have analyzed the expression of TEs in publicly available spleen tissue transcriptomic data generated for this species after immune and stress challenge. By analyzing the transcriptome assembly, we detected a high number of TE segments. Moreover, some distinct TE families were differentially expressed in some conditions. Our result shows that several TEs are capable of being transcribed in R. marina and they could help to generate a rapid response of specimens to the environment. Also, we can suggest that these TEs could be activated in the germinative cells as well producing variability to be selected and shaped by the evolutionary processes behind the success of this invasive species. Thus, the TEs are important targets for investigation in the context of R. marina adaptation.

Indexed as

AnimalsBufo marinusDNA Transposable ElementsFemaleMaleStress, PhysiologicalDNA Transposable ElementsAdaptationRetrotransposonRNA-seqTranscriptome

Identifiers

PMID34383169
OpenAlexW3190303844

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.